Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 PIGFP2-201ENST00000421400 651 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 DPPA3P1-201ENST00000448050 469 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 NDUFB1P2-201ENST00000449477 176 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 RPL31P3-201ENST00000458430 332 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC002456.2-201ENST00000509356 380 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC108078.2-201ENST00000510750 236 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 MRPS36P2-201ENST00000512569 299 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 Y_RNA.689-201ENST00000516589 107 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 SNORA18.6-201ENST00000516792 115 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 RNU6-410P-201ENST00000517006 107 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 RNU6-1220P-201ENST00000517126 108 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 CKS1BP7-201ENST00000522230 235 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AP002453.2-201ENST00000533503 320 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC090616.3-201ENST00000582184 217 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AL451007.1-201ENST00000595491 289 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC073544.2-201ENST00000601155 540 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AL355877.2-201ENST00000603670 358 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC135507.1-201ENST00000607214 561 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC245008.1-201ENST00000608123 476 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 MIR6840-201ENST00000611937 71 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 MIR203B-201ENST00000636080 86 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 MIR3199-2-201ENST00000636243 86 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 AC007336.1-201ENST00000576365 3828 ntBASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
RPUSD4Q96CM3 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 Y_RNA.33-201ENST00000362591 102 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 SNORD116-9-201ENST00000384000 95 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 SNORA75-201ENST00000384158 137 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 RNU6-74P-201ENST00000384235 107 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 SNORD116-3-201ENST00000384287 95 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 SNORD116-7-201ENST00000384404 95 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 SNORD116-5-201ENST00000384462 95 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 MIR518D-201ENST00000385014 87 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 U3.26-201ENST00000391236 204 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AL162578.1-201ENST00000406202 378 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 OR51A5P-201ENST00000415429 942 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 GPR143P-201ENST00000434155 205 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 MTATP6P16-201ENST00000434543 526 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC244505.5-201ENST00000443639 207 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 USP9YP29-201ENST00000445112 563 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 MTCYBP1-201ENST00000454315 1119 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 RPS29P26-201ENST00000477483 171 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 MTCO2P4-201ENST00000517968 247 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AP000873.5-201ENST00000533906 236 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC234778.2-201ENST00000566241 354 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 MIR3616-201ENST00000584070 92 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC091152.3-201ENST00000604227 325 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 OR2AS2P-201ENST00000606902 342 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC009509.4-201ENST00000619202 509 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 AC099842.1-201ENST00000619919 596 ntBASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
RPUSD4Q96CM3 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
RPUSD4Q96CM3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 RNU6-166P-201ENST00000384371 107 ntBASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 RNU6-348P-201ENST00000384386 107 ntBASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 RNU6-658P-201ENST00000384606 106 ntBASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 Y_RNA.553-201ENST00000384670 102 ntBASIC2.02□□□□□ -2.09
RPUSD4Q96CM3 RNU6-1072P-201ENST00000384703 107 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 180.8 ms