Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC022616.3-201ENST00000523940 148 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC006199.1-201ENST00000548728 219 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 RPL21P5-201ENST00000554662 472 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC106782.4-201ENST00000568264 210 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 MIR3167-201ENST00000579623 85 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.03□□□□□ -2.08
CCDC54Q8NEL0 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.03□□□□□ -2.09
CCDC54Q8NEL0 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
CCDC54Q8NEL0 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 SNORD56.2-201ENST00000363242 71 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 SNORA3A-201ENST00000364113 130 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 MIR518D-201ENST00000385014 87 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 SNORA48.2-201ENST00000390926 124 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 SNORA26.8-201ENST00000391306 124 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 RNU2-62P-201ENST00000410868 191 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 RNU6-195P-201ENST00000411352 109 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 RPL26P27-201ENST00000414397 437 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 CALM2P2-201ENST00000428512 440 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 MED14P1-201ENST00000430517 648 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC004383.1-201ENST00000438135 289 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 SNORD97-201ENST00000459187 142 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC007182.2-201ENST00000489251 402 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC117522.2-201ENST00000510049 657 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 RNA5SP356-201ENST00000515972 94 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 RNU6-1183P-201ENST00000517054 60 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 LARP7P3-201ENST00000579888 337 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AL391813.1-201ENST00000603098 260 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC091152.3-201ENST00000604227 325 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 MIR15A-201ENST00000607334 83 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 MIR6817-201ENST00000615588 66 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AL449363.1-201ENST00000617815 186 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC010378.1-201ENST00000619270 362 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC007998.5-201ENST00000622938 237 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 CTSLP2-204ENST00000629029 392 ntBASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.02□□□□□ -2.09
CCDC54Q8NEL0 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL359851.1-201ENST00000569460 4997 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 MIR208A-201ENST00000362287 71 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 RNA5SP68-201ENST00000363885 119 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 RNU6-169P-201ENST00000365336 107 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 RNU6-301P-201ENST00000384277 107 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 RNU6-658P-201ENST00000384606 106 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 MT-TH-201ENST00000387441 69 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 SNORA48.3-201ENST00000391081 134 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 USP9YP15-201ENST00000442391 422 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 MTATP6P7-201ENST00000453315 681 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC090255.1-201ENST00000495779 349 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 FAM92A1P2-202ENST00000504766 877 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC109927.2-201ENST00000506416 303 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 RNU5F-8P-201ENST00000515941 111 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 RNU6-581P-201ENST00000516214 105 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC025755.1-201ENST00000521306 278 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC021269.2-201ENST00000532318 330 ntBASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC54Q8NEL0 MIR4319-201ENST00000577285 85 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms