Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 OR5B19P-201ENST00000531766 928 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC110491.1-201ENST00000562191 2010 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC137800.2-201ENST00000574375 120 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 MIR3682-201ENST00000581338 84 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 OR1M4P-201ENST00000589199 287 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AC011939.3-201ENST00000613686 466 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 AL158063.1-201ENST00000615349 536 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
SKA3Q8IX90 PISRT1-201ENST00000626175 531 ntBASIC2.21□□□□□ -2.06
SKA3Q8IX90 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
SKA3Q8IX90 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 Y_RNA.22-201ENST00000362492 102 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 RNA5SP68-201ENST00000363885 119 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 Y_RNA.201-201ENST00000364052 96 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 RNY1P12-201ENST00000364251 105 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 Y_RNA.534-201ENST00000384599 112 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 MORF4L1P6-201ENST00000418771 268 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AL358075.3-201ENST00000426289 226 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 ISCA1P6-201ENST00000427740 390 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 MED13P1-201ENST00000428342 171 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 RPL23AP30-201ENST00000432419 501 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC009961.2-201ENST00000435771 251 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC073614.1-201ENST00000438690 650 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC098831.1-201ENST00000440661 216 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
SKA3Q8IX90 GAPDHP17-201ENST00000449858 1001 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 RPL31P41-201ENST00000477967 372 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 RN7SKP24-201ENST00000515888 284 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 RNA5SP320-201ENST00000516263 124 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 RNU6-914P-201ENST00000516749 109 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 RNU6-1315P-201ENST00000517187 99 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 GLYCAM1-201ENST00000546596 285 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC024619.4-201ENST00000580924 316 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 MIR6817-201ENST00000615588 66 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.2□□□□□ -2.06
SKA3Q8IX90 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
SKA3Q8IX90 ADAM3A-203ENST00000461344 2157 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 MTND4P35-201ENST00000604257 1375 ntBASIC2.2□□□□□ -2.06
SKA3Q8IX90 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
SKA3Q8IX90 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 MIR558-201ENST00000384920 94 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 RNU6-750P-201ENST00000390946 107 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 RNU6-248P-201ENST00000410720 107 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 AL109913.1-201ENST00000421173 514 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 Z82209.1-201ENST00000422141 2135 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 RPL31P35-201ENST00000431058 377 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC098591.2-201ENST00000510152 315 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC108078.2-201ENST00000510750 236 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 RNU4-29P-201ENST00000515943 174 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 RNA5SP148-201ENST00000516527 94 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 Y_RNA.689-201ENST00000516589 107 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 OR5BN1P-201ENST00000532955 829 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC087241.2-201ENST00000535801 324 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.19□□□□□ -2.06
SKA3Q8IX90 AC090578.1-201ENST00000604955 591 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 Z69908.1-201ENST00000622603 247 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 ELL2P3-201ENST00000457883 1602 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SKA3Q8IX90 TEX21P-201ENST00000447107 1476 ntBASIC2.19□□□□□ -2.06
SKA3Q8IX90 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.18□□□□□ -2.06
SKA3Q8IX90 FARSBP1-201ENST00000435808 1778 ntBASIC2.18□□□□□ -2.06
SKA3Q8IX90 NACAP2-201ENST00000318548 624 ntBASIC2.18□□□□□ -2.06
SKA3Q8IX90 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
SKA3Q8IX90 RNA5SP456-201ENST00000364002 114 ntBASIC2.18□□□□□ -2.06
SKA3Q8IX90 Y_RNA.510-201ENST00000384511 114 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 258.3 ms