Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AL117336.2-201ENST00000602435 335 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 ELOCP5-201ENST00000604924 333 ntBASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CCDC28AQ8IWP9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-78P-201ENST00000362897 107 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 RNU1-105P-201ENST00000363470 161 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AL445529.1-201ENST00000398713 389 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC074085.1-201ENST00000413598 418 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AL365496.1-201ENST00000426885 215 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC073264.2-201ENST00000448886 166 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 RPL23AP81-201ENST00000455252 467 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC130509.1-201ENST00000464158 433 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC093663.1-201ENST00000497190 394 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 RN7SKP21-201ENST00000516503 220 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 SNORD19.2-201ENST00000516978 73 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 RN7SKP92-201ENST00000517266 244 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC104576.1-201ENST00000524225 88 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC009643.1-201ENST00000532030 391 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 RN7SL690P-201ENST00000582087 240 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC020895.1-201ENST00000595362 272 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC024153.1-201ENST00000603103 365 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AL670379.10-201ENST00000604330 253 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AL354984.3-201ENST00000604803 325 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AL670379.9-201ENST00000605428 253 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AC004832.5-201ENST00000608677 401 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 Mico1.1-201ENST00000611698 204 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 MIR6780A-201ENST00000615089 68 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 AL355365.1-201ENST00000616480 294 ntBASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC28AQ8IWP9 FAM35CP-201ENST00000554755 2470 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC008669.1-201ENST00000565823 2178 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 MIR148B-201ENST00000362252 99 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 RNA5SP383-201ENST00000362934 120 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 SNORA70F-201ENST00000384142 135 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 MIR548F5-201ENST00000408421 86 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 RNU2-49P-201ENST00000410666 184 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AL117339.3-201ENST00000418733 162 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AL645568.3-201ENST00000433683 316 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AL161651.1-201ENST00000440882 223 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 RN7SL271P-201ENST00000487601 295 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 MTND5P5-201ENST00000503764 376 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC116655.1-201ENST00000508324 901 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-377P-201ENST00000515965 102 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-581P-201ENST00000516214 105 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 SNORA43.2-201ENST00000516652 128 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 TRMT10BP1-201ENST00000519377 943 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC084783.1-201ENST00000565846 910 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC025281.1-201ENST00000567026 265 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC011890.2-201ENST00000613393 294 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AC010378.1-201ENST00000619270 362 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 U4.7-201ENST00000638126 106 ntBASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC28AQ8IWP9 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC008264.2-201ENST00000610193 3731 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-942P-201ENST00000363002 107 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 Y_RNA.339-201ENST00000365325 102 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-95P-201ENST00000384697 107 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 MIR1251-201ENST00000408552 70 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 RN7SKP123-201ENST00000410732 291 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms