Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AL157777.2-201ENST00000258070 137 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
USP43Q70EL4 Y_RNA.167-201ENST00000363735 109 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 Y_RNA.257-201ENST00000364596 102 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 Y_RNA.367-201ENST00000365544 101 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 RNU6-1032P-201ENST00000384100 107 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 RNU6-39P-201ENST00000384344 107 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 RPL21P3-201ENST00000395517 478 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 SOD2P1-201ENST00000396543 562 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 MTCYBP4-201ENST00000401524 249 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 RNU6-193P-201ENST00000410977 107 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL356968.1-201ENST00000416622 474 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AC018865.2-201ENST00000423631 129 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.12□□□□□ -1.91
USP43Q70EL4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 ERLEC1P1-201ENST00000433806 578 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.12□□□□□ -1.91
USP43Q70EL4 RPS24P13-201ENST00000442520 397 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AC007967.1-201ENST00000455422 1159 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 ELOCP24-201ENST00000456370 334 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.12□□□□□ -1.91
USP43Q70EL4 SNORD105B-201ENST00000458770 79 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 snoU13.8-201ENST00000458890 104 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 Y_RNA.635-201ENST00000459041 101 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AC146507.2-201ENST00000460608 476 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 RPL32P34-201ENST00000486380 400 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.12□□□□□ -1.91
USP43Q70EL4 HIGD1AP3-201ENST00000515857 278 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 Y_RNA.668-201ENST00000516233 93 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 RNU6-1088P-201ENST00000516850 104 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AP001804.3-201ENST00000525146 880 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.12□□□□□ -1.91
USP43Q70EL4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AC092470.1-201ENST00000546187 132 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AL670379.11-201ENST00000604059 253 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL670379.10-201ENST00000604330 253 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL670379.12-201ENST00000605291 253 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL670379.9-201ENST00000605428 253 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AC107871.2-201ENST00000612894 502 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL390240.1-201ENST00000612950 384 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 AL159972.1-201ENST00000625150 448 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 U6.105-201ENST00000637379 88 ntBASIC3.12□□□□□ -1.91
USP43Q70EL4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USP43Q70EL4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
USP43Q70EL4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.11□□□□□ -1.91
USP43Q70EL4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP43Q70EL4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
USP43Q70EL4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.11□□□□□ -1.91
USP43Q70EL4 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USP43Q70EL4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
USP43Q70EL4 AC017071.1-201ENST00000564407 2204 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP43Q70EL4 AL139276.1-201ENST00000311910 1001 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RNU6-97P-201ENST00000363387 104 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RNU6-38P-201ENST00000384085 107 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 MRPL42P3-201ENST00000401492 326 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RPL7L1P10-201ENST00000427790 463 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.11□□□□□ -1.91
USP43Q70EL4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.11□□□□□ -1.91
USP43Q70EL4 AC244505.4-201ENST00000434905 287 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.11□□□□□ -1.91
USP43Q70EL4 SSXP5-201ENST00000443473 287 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.11□□□□□ -1.91
USP43Q70EL4 RPL7P52-201ENST00000449200 742 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.11□□□□□ -1.91
USP43Q70EL4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.11□□□□□ -1.91
USP43Q70EL4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.11□□□□□ -1.91
USP43Q70EL4 SNORD121B-201ENST00000458838 81 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RNU6-333P-201ENST00000459117 107 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RN7SL293P-201ENST00000481765 281 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RNU6-864P-201ENST00000516256 108 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RNU6-764P-201ENST00000516396 105 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RN7SKP219-201ENST00000516825 296 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RNU6-352P-201ENST00000516908 107 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RPL7P20-201ENST00000520308 745 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AP005435.4-201ENST00000529514 284 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 RPL21P12-201ENST00000559810 515 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.11□□□□□ -1.91
USP43Q70EL4 MIR5195-201ENST00000583555 115 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AC005357.1-201ENST00000588399 301 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.11□□□□□ -1.91
USP43Q70EL4 AC022893.3-201ENST00000607665 437 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AL157817.1-201ENST00000614264 790 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 U73479.1-201ENST00000618062 168 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 MIR7975-201ENST00000619350 68 ntBASIC3.11□□□□□ -1.91
USP43Q70EL4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.11□□□□□ -1.91
USP43Q70EL4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms