Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MTND4P7-201ENST00000523876 130 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AL137161.1-201ENST00000532231 390 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 uc_338.25-201ENST00000613756 156 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AL442067.2-201ENST00000614033 363 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AL589994.2-201ENST00000621124 579 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC007998.5-201ENST00000622938 237 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC005858.4-201ENST00000623191 700 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 MIR3651-201ENST00000630427 90 ntBASIC3.82□□□□□ -1.8
VPS53Q5VIR6 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS53Q5VIR6 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RNU6-1287P-201ENST00000362914 107 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 SNORA36C-201ENST00000384289 132 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RNU6-1060P-201ENST00000384664 107 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RNU6-1197P-201ENST00000391183 107 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RNU6-1077P-201ENST00000410506 102 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AL353678.1-201ENST00000422735 741 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 MRPL50P4-201ENST00000446432 475 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AL590664.1-201ENST00000448065 339 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RNU6-329P-201ENST00000459618 107 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RPS27P29-201ENST00000463110 252 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RPL30P14-201ENST00000482744 348 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 FAM206BP-201ENST00000510179 541 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 SNORA19.2-201ENST00000516013 114 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RPL7P20-201ENST00000520308 745 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AP006587.4-201ENST00000526053 529 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 RANP3-201ENST00000530970 276 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 MIR4742-201ENST00000581069 85 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 MIR4795-201ENST00000584182 89 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AC008521.1-201ENST00000587471 187 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AC243960.4-201ENST00000600532 288 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 SDR42E1P2-201ENST00000614861 481 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 MTND1P37-201ENST00000636562 264 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 TPTEP1-208ENST00000636884 213 ntBASIC3.81□□□□□ -1.8
VPS53Q5VIR6 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS53Q5VIR6 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL355596.1-201ENST00000565399 3996 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RNU6-82P-201ENST00000363970 107 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RNU6-701P-201ENST00000384059 107 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 U3.19-201ENST00000390893 196 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RNU6-550P-201ENST00000391057 101 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL122016.1-201ENST00000403365 367 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RPL32P35-201ENST00000415214 394 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 NDUFB4P7-201ENST00000423198 363 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RPL21P8-201ENST00000465083 535 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 HMGN2P13-201ENST00000476476 274 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL049874.1-201ENST00000489560 388 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC110794.1-201ENST00000505816 425 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC103851.1-201ENST00000506833 274 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RNU4-49P-201ENST00000516080 140 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 RNU6-390P-201ENST00000516259 103 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC005668.1-201ENST00000571142 476 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 UBL5P2-201ENST00000583788 219 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC044792.1-201ENST00000593294 196 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL022345.1-201ENST00000607292 135 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AL365204.3-201ENST00000612448 685 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC099654.10-201ENST00000640395 161 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 AC121333.1-201ENST00000567488 2709 ntBASIC3.8□□□□□ -1.8
VPS53Q5VIR6 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS53Q5VIR6 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 AC006026.1-201ENST00000444025 1803 ntBASIC3.79□□□□□ -1.8
VPS53Q5VIR6 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS53Q5VIR6 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms