Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC0.32□□□□□ -2.36
COL7A1Q02388 AC107954.1-201ENST00000565906 727 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC040174.2-201ENST00000602701 465 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC113194.1-201ENST00000606037 500 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC093788.1-201ENST00000609356 927 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AL590282.1-201ENST00000610379 1136 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC130454.1-201ENST00000622948 401 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC010329.5-201ENST00000623497 2174 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.32□□□□□ -2.36
COL7A1Q02388 RNU6-1293P-201ENST00000384077 107 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 Y_RNA.514-201ENST00000384528 112 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 MIR92A1-201ENST00000385233 78 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.32□□□□□ -2.36
COL7A1Q02388 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.32□□□□□ -2.36
COL7A1Q02388 OR5AK1P-201ENST00000524837 922 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 RNY1P9-201ENST00000532431 109 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.32□□□□□ -2.36
COL7A1Q02388 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC0.32□□□□□ -2.36
COL7A1Q02388 AC139769.3-201ENST00000618383 175 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 RNU6-156P-201ENST00000621869 107 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 AC083865.1-201ENST00000636634 831 ntBASIC0.32□□□□□ -2.36
COL7A1Q02388 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC0.31□□□□□ -2.36
COL7A1Q02388 MIR365A-201ENST00000362260 87 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 RNU6-1331P-201ENST00000363658 106 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 RNY3P5-201ENST00000384127 102 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC0.31□□□□□ -2.36
COL7A1Q02388 DYNLT3P2-201ENST00000442517 295 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 Z77249.1-201ENST00000444622 1175 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.31□□□□□ -2.36
COL7A1Q02388 snoU13.7-201ENST00000459220 104 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 OR2A41P-201ENST00000473586 105 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AC104108.1-201ENST00000509930 412 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 SNORA48.10-201ENST00000516965 160 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
COL7A1Q02388 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.31□□□□□ -2.36
COL7A1Q02388 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC0.31□□□□□ -2.36
COL7A1Q02388 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.31□□□□□ -2.36
COL7A1Q02388 AC243960.4-201ENST00000600532 288 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 DUXAP10-204ENST00000612052 616 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC0.31□□□□□ -2.36
COL7A1Q02388 AC006963.1-201ENST00000624003 1052 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
COL7A1Q02388 SNORA25.8-201ENST00000364831 128 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 Y_RNA.410-201ENST00000383992 113 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 MIR938-201ENST00000401216 83 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 ZNF92P1Y-201ENST00000415010 1191 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
COL7A1Q02388 RPS25P9-201ENST00000435591 252 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 TRGVB-201ENST00000453257 471 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 SETP11-201ENST00000473027 690 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AC111193.1-201ENST00000504097 155 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.31□□□□□ -2.36
COL7A1Q02388 AC108120.2-201ENST00000512973 294 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 RNU5F-8P-201ENST00000515941 111 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 SNORA31.13-201ENST00000516624 135 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 CYP4A27P-201ENST00000567218 190 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 MIR378F-201ENST00000578143 78 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC0.31□□□□□ -2.36
COL7A1Q02388 HSBP1P2-201ENST00000299671 229 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 RNA5SP391-201ENST00000363456 119 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
COL7A1Q02388 RNU6-98P-201ENST00000384173 107 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AL138880.1-201ENST00000405824 642 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AL645638.1-201ENST00000440519 361 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 RPL31P53-201ENST00000457065 348 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC0.31□□□□□ -2.36
COL7A1Q02388 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC0.31□□□□□ -2.36
COL7A1Q02388 AP001180.6-201ENST00000584918 159 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AL355877.2-201ENST00000603670 358 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AP003072.5-201ENST00000623872 773 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 AC015726.3-201ENST00000624501 418 ntBASIC0.31□□□□□ -2.36
COL7A1Q02388 TPTE2P4-201ENST00000258589 1605 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 RNY4P6-201ENST00000363667 96 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 RNU6-1251P-201ENST00000364502 107 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 RNU6-317P-201ENST00000384031 107 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 RNU6-1184P-201ENST00000384588 108 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AL136372.1-201ENST00000403060 228 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 MTND4P11-201ENST00000417020 1058 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 SEPT2P1-201ENST00000419651 180 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.3□□□□□ -2.36
COL7A1Q02388 MTCYBP34-201ENST00000439552 670 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC0.3□□□□□ -2.36
COL7A1Q02388 SNORD57-201ENST00000448188 72 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC015908.1-201ENST00000478739 476 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC133963.2-201ENST00000513686 578 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.3□□□□□ -2.36
COL7A1Q02388 AC010615.3-201ENST00000597319 394 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC021749.1-201ENST00000604322 607 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC106900.2-201ENST00000604994 317 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC055876.5-201ENST00000605667 259 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC055764.2-201ENST00000610089 670 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AL133370.2-201ENST00000619934 439 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AL136313.1-201ENST00000624804 202 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 MIR32-201ENST00000384965 70 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
COL7A1Q02388 MORN2-203ENST00000409131 544 ntTSL 5 BASIC0.3□□□□□ -2.36
COL7A1Q02388 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC0.3□□□□□ -2.36
COL7A1Q02388 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC0.3□□□□□ -2.36
COL7A1Q02388 EIF4EP4-201ENST00000424916 578 ntBASIC0.3□□□□□ -2.36
COL7A1Q02388 AC024082.2-201ENST00000434771 238 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms