Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.65□□□□□ -1.82
COL4A3Q01955 SAGE2P-201ENST00000420011 2126 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.65□□□□□ -1.82
COL4A3Q01955 AC008065.1-201ENST00000428525 348 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 PSMA2P3-201ENST00000429685 675 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 AL591704.1-201ENST00000432574 275 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 AL121890.1-201ENST00000435457 205 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 RPS4XP2-201ENST00000458402 793 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 TRBV12-2-201ENST00000489763 344 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 RN7SKP60-201ENST00000516985 239 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.65□□□□□ -1.82
COL4A3Q01955 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.65□□□□□ -1.82
COL4A3Q01955 HSBP1P1-201ENST00000555205 166 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.65□□□□□ -1.82
COL4A3Q01955 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.65□□□□□ -1.82
COL4A3Q01955 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.65□□□□□ -1.82
COL4A3Q01955 AL109918.3-201ENST00000603072 338 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 AC006023.1-201ENST00000603944 259 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 IGHV3-29-201ENST00000604817 344 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL4A3Q01955 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A3Q01955 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A3Q01955 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.65□□□□□ -1.83
COL4A3Q01955 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
COL4A3Q01955 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A3Q01955 PABPC1P7-201ENST00000413177 1513 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 FTLP6-201ENST00000355274 422 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 RNU6-371P-201ENST00000364283 108 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 Y_RNA.480-201ENST00000384364 102 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 Y_RNA.489-201ENST00000384410 101 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.65□□□□□ -1.83
COL4A3Q01955 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A3Q01955 AC004552.1-201ENST00000419089 348 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC004866.2-201ENST00000438285 481 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC099799.1-201ENST00000439809 192 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.65□□□□□ -1.83
COL4A3Q01955 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.65□□□□□ -1.83
COL4A3Q01955 HMGB3P30-201ENST00000457863 606 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 RPS26P3-201ENST00000470205 348 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AP000926.1-201ENST00000479573 241 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC090543.2-201ENST00000483963 348 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC004057.1-201ENST00000485827 348 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC104564.1-201ENST00000493028 407 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 RN7SL504P-201ENST00000494496 287 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 BTF3L4P4-201ENST00000506381 449 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.65□□□□□ -1.83
COL4A3Q01955 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.65□□□□□ -1.83
COL4A3Q01955 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.65□□□□□ -1.83
COL4A3Q01955 Y_RNA.676-201ENST00000516393 96 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AP006245.1-201ENST00000522549 120 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AL606534.2-204ENST00000635008 178 ntBASIC3.65□□□□□ -1.83
COL4A3Q01955 AC007656.2-201ENST00000624902 4547 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.64□□□□□ -1.83
COL4A3Q01955 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
COL4A3Q01955 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A3Q01955 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A3Q01955 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
COL4A3Q01955 Y_RNA.380-201ENST00000365663 111 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 Y_RNA.512-201ENST00000384518 102 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 RNU6-306P-201ENST00000384617 107 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 AC063979.1-201ENST00000415539 377 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 UBE2V1P4-201ENST00000425374 344 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 RPS24P13-201ENST00000442520 397 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 AC025750.2-201ENST00000442609 450 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 OSTCP8-201ENST00000445117 448 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 AC008264.1-201ENST00000447612 367 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 PCNPP5-201ENST00000452246 481 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.64□□□□□ -1.83
COL4A3Q01955 AC006445.1-201ENST00000491925 405 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 RNU6-677P-201ENST00000516914 101 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 AC025423.5-201ENST00000550230 219 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 AC016727.2-201ENST00000603988 621 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 SNORD58B-201ENST00000607313 66 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 AC107871.2-201ENST00000612894 502 ntBASIC3.64□□□□□ -1.83
COL4A3Q01955 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A3Q01955 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A3Q01955 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.64□□□□□ -1.83
COL4A3Q01955 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.64□□□□□ -1.83
COL4A3Q01955 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A3Q01955 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
COL4A3Q01955 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A3Q01955 Y_RNA.151-201ENST00000363566 112 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 SNORA23-201ENST00000365128 182 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A3Q01955 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A3Q01955 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.63□□□□□ -1.83
COL4A3Q01955 BX842559.1-201ENST00000419615 532 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A3Q01955 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A3Q01955 AL591212.2-201ENST00000433923 257 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A3Q01955 AC011816.1-201ENST00000441346 546 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 DYNLT3P2-201ENST00000442517 295 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 RPL31P60-201ENST00000478450 367 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.63□□□□□ -1.83
COL4A3Q01955 RNU6-475P-201ENST00000516073 104 ntBASIC3.63□□□□□ -1.83
COL4A3Q01955 RNY3P15-201ENST00000516297 97 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms