Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIR325-201ENST00000385260 98 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 SNORD37.1-201ENST00000390968 65 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN9P43378 RNA5SP111-201ENST00000411386 101 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN9P43378 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.23□□□□□ -1.89
PTPN9P43378 SNRPEP9-201ENST00000436794 238 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 HMGB1P31-201ENST00000437242 427 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN9P43378 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN9P43378 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.23□□□□□ -1.89
PTPN9P43378 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN9P43378 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN9P43378 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.23□□□□□ -1.89
PTPN9P43378 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.23□□□□□ -1.89
PTPN9P43378 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.23□□□□□ -1.89
PTPN9P43378 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.23□□□□□ -1.89
PTPN9P43378 AF235103.2-201ENST00000525753 346 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.23□□□□□ -1.89
PTPN9P43378 BNIP3P6-201ENST00000549284 499 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.23□□□□□ -1.89
PTPN9P43378 AL157871.3-201ENST00000557231 293 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 MTCO3P24-201ENST00000572729 782 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 MIR3941-201ENST00000582572 103 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.23□□□□□ -1.89
PTPN9P43378 FTX_3.1-201ENST00000610451 147 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN9P43378 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 DUXAP9-208ENST00000622815 614 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.23□□□□□ -1.89
PTPN9P43378 AC099654.14-201ENST00000638599 341 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 HSPA8P4-201ENST00000511877 1920 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.22□□□□□ -1.89
PTPN9P43378 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
PTPN9P43378 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.22□□□□□ -1.89
PTPN9P43378 NACAP2-201ENST00000318548 624 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 Y_RNA.88-201ENST00000363029 99 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.22□□□□□ -1.89
PTPN9P43378 Y_RNA.399-201ENST00000383955 105 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 RNU6-38P-201ENST00000384085 107 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 RNU6-1035P-201ENST00000384477 107 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 RNU6-140P-201ENST00000384566 108 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 RNU6-1127P-201ENST00000384580 107 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.22□□□□□ -1.89
PTPN9P43378 AL139413.1-201ENST00000421309 217 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.22□□□□□ -1.89
PTPN9P43378 AC006946.1-201ENST00000429106 328 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 MTND3P16-201ENST00000452205 344 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.22□□□□□ -1.89
PTPN9P43378 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.22□□□□□ -1.89
PTPN9P43378 RNU6-333P-201ENST00000459117 107 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 RPL21P41-201ENST00000459863 264 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 RN7SL504P-201ENST00000494496 287 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC069439.1-201ENST00000494739 167 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC026801.1-201ENST00000497178 464 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 MTND4LP22-201ENST00000508209 276 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.22□□□□□ -1.89
PTPN9P43378 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.22□□□□□ -1.89
PTPN9P43378 RNA5SP385-201ENST00000515947 110 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC245166.1-201ENST00000521012 253 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.22□□□□□ -1.89
PTPN9P43378 MIR3609-201ENST00000582661 80 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 BNIP3P22-201ENST00000593399 556 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC007179.3-201ENST00000604976 235 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC008962.1-201ENST00000605729 304 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC004832.5-201ENST00000608677 401 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 AC107294.3-201ENST00000609211 526 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.22□□□□□ -1.89
PTPN9P43378 DUSP12P1-201ENST00000612874 516 ntBASIC3.22□□□□□ -1.89
PTPN9P43378 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.22□□□□□ -1.89
PTPN9P43378 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.22□□□□□ -1.89
PTPN9P43378 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PTPN9P43378 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
PTPN9P43378 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PTPN9P43378 AC093536.2-201ENST00000565257 1406 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PTPN9P43378 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PTPN9P43378 AC073325.2-201ENST00000339545 159 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 RNU6-371P-201ENST00000364283 108 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 SNORA4.3-201ENST00000365564 137 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 SNORA46-201ENST00000384762 135 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 RNU2-68P-201ENST00000410878 191 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 ERLEC1P1-201ENST00000433806 578 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 RPL30P14-201ENST00000482744 348 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC079140.5-201ENST00000507882 310 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.21□□□□□ -1.9
PTPN9P43378 MIR5692A1-201ENST00000580523 69 ntBASIC3.21□□□□□ -1.9
PTPN9P43378 MIR548AC-201ENST00000585049 88 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms