Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD3P31249 AL359672.1-201ENST00000442302 409 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC009237.8-201ENST00000445492 379 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 HMGB3P22-202ENST00000451823 572 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC084198.1-201ENST00000477747 402 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD3P31249 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 AC008716.1-201ENST00000511084 513 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD3P31249 AC093303.1-201ENST00000514549 295 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 RNA5SP165-201ENST00000517142 115 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC009902.1-201ENST00000519351 183 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC104576.1-201ENST00000524225 88 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD3P31249 LRRC37A5P-203ENST00000580181 585 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 MIR3171-201ENST00000584270 74 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 ELOCP5-201ENST00000604924 333 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC007179.3-201ENST00000604976 235 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 AC123912.5-201ENST00000605470 343 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 ATP5A1P2-202ENST00000616464 443 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 PLCE1P1-201ENST00000622094 305 ntBASIC2.97□□□□□ -1.93
HOXD3P31249 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD3P31249 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD3P31249 ST7-221ENST00000465133 2155 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXD3P31249 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
HOXD3P31249 MAPK10-373ENST00000641983 6772 ntBASIC2.96□□□□□ -1.93
HOXD3P31249 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD3P31249 AC093908.1-201ENST00000623125 8092 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD3P31249 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXD3P31249 AC008568.2-201ENST00000623862 2313 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 Y_RNA.31-201ENST00000362574 102 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 Y_RNA.33-201ENST00000362591 102 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 Y_RNA.480-201ENST00000384364 102 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RNU6-306P-201ENST00000384617 107 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 MIR199A2-201ENST00000385289 110 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 MIR591-201ENST00000385290 95 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
HOXD3P31249 SNORA75.4-201ENST00000391278 119 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
HOXD3P31249 AL391417.1-201ENST00000404100 426 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RPL5P18-201ENST00000406671 891 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD3P31249 Y_RNA.646-201ENST00000410980 101 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD3P31249 YPEL5P1-201ENST00000419731 367 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 PGBD4P6-201ENST00000421501 610 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 UBE2D3P2-201ENST00000424409 445 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD3P31249 AC087650.1-201ENST00000431445 468 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 MYL8P-204ENST00000431574 518 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 SNAP23P1-201ENST00000433229 246 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
HOXD3P31249 RPS3AP12-201ENST00000443616 753 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RNU7-152P-201ENST00000458982 64 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RNU7-187P-201ENST00000458985 68 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RNU7-170P-201ENST00000459303 61 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RNU7-138P-201ENST00000459479 64 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD3P31249 RNU6-1170P-201ENST00000515974 106 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RNA5SP164-201ENST00000516533 110 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AC022695.1-201ENST00000522089 237 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 CASP1P1-201ENST00000526345 212 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD3P31249 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXD3P31249 AL442663.2-201ENST00000554385 511 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXD3P31249 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD3P31249 AC005034.5-201ENST00000604219 466 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AC004805.2-201ENST00000605382 482 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AC010378.1-201ENST00000619270 362 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AF117829.1-206ENST00000621883 3802 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AC244517.12-201ENST00000623581 663 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 AC134503.1-201ENST00000633048 54 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD3P31249 IPO8P1-201ENST00000455509 3109 ntBASIC2.96□□□□□ -1.94
HOXD3P31249 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD3P31249 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXD3P31249 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
HOXD3P31249 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
HOXD3P31249 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD3P31249 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD3P31249 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
HOXD3P31249 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD3P31249 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD3P31249 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD3P31249 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD3P31249 Y_RNA.151-201ENST00000363566 112 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 Y_RNA.162-201ENST00000363683 102 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 Y_RNA.187-201ENST00000363918 113 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD3P31249 RNU6-128P-201ENST00000383976 107 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 Y_RNA.404-201ENST00000383978 102 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 RNU6-214P-201ENST00000384130 107 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 RNU6-310P-201ENST00000384655 107 ntBASIC2.95□□□□□ -1.94
HOXD3P31249 MIR559-201ENST00000385188 96 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms