Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC005300.1-201ENST00000428401 373 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.84□□□□□ -1.79
SMARCA1P28370 AC009237.8-201ENST00000445492 379 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 MRPL50P4-201ENST00000446432 475 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.84□□□□□ -1.79
SMARCA1P28370 RN7SL807P-201ENST00000470923 297 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC012181.1-201ENST00000479895 423 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC110794.1-201ENST00000505816 425 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC103851.1-201ENST00000506833 274 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 RNU2-69P-201ENST00000516061 100 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.79
SMARCA1P28370 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.84□□□□□ -1.79
SMARCA1P28370 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC092747.3-201ENST00000603769 301 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 AC002076.2-201ENST00000617362 122 ntBASIC3.84□□□□□ -1.79
SMARCA1P28370 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.84□□□□□ -1.79
SMARCA1P28370 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.84□□□□□ -1.79
SMARCA1P28370 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.84□□□□□ -1.79
SMARCA1P28370 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
SMARCA1P28370 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.8
SMARCA1P28370 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.83□□□□□ -1.8
SMARCA1P28370 AC121333.1-201ENST00000567488 2709 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.83□□□□□ -1.8
SMARCA1P28370 RNU6-371P-201ENST00000364283 108 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SMARCA1P28370 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.83□□□□□ -1.8
SMARCA1P28370 Y_RNA.509-201ENST00000384506 99 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 RNVU1-14-201ENST00000384770 164 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 MT-TD-201ENST00000387419 68 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.83□□□□□ -1.8
SMARCA1P28370 RPS20P22-201ENST00000473700 357 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 RPL30P5-201ENST00000494923 336 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 FGF7P4-201ENST00000509595 295 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.83□□□□□ -1.8
SMARCA1P28370 AC090136.1-201ENST00000520009 240 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AC093331.1-201ENST00000521474 169 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.83□□□□□ -1.8
SMARCA1P28370 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.83□□□□□ -1.8
SMARCA1P28370 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.83□□□□□ -1.8
SMARCA1P28370 MTCO3P23-201ENST00000561363 289 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AC026464.5-201ENST00000562497 722 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.83□□□□□ -1.8
SMARCA1P28370 uc_338.1-201ENST00000612113 180 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AC068831.7-201ENST00000616954 363 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 AC103705.1-201ENST00000619013 241 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 Z99571.1-201ENST00000636677 394 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 MTND5P1-201ENST00000445440 1375 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 PWAR6-201ENST00000552334 4618 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.83□□□□□ -1.8
SMARCA1P28370 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.83□□□□□ -1.8
SMARCA1P28370 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
SMARCA1P28370 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.82□□□□□ -1.8
SMARCA1P28370 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SMARCA1P28370 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.82□□□□□ -1.8
SMARCA1P28370 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SMARCA1P28370 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SMARCA1P28370 RNU4-73P-201ENST00000363164 141 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 Y_RNA.184-201ENST00000363884 108 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 Y_RNA.399-201ENST00000383955 105 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 Y_RNA.414-201ENST00000384011 101 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 Y_RNA.530-201ENST00000384587 101 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 SNORA1.3-201ENST00000384676 136 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 RNA5SP219-201ENST00000390940 113 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 USP9YP20-201ENST00000419224 558 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 HSPE1P1-201ENST00000421494 318 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.82□□□□□ -1.8
SMARCA1P28370 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.82□□□□□ -1.8
SMARCA1P28370 RPL21P41-201ENST00000459863 264 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 DYNLL1P5-201ENST00000467158 270 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 TRBV1-201ENST00000476502 284 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.82□□□□□ -1.8
SMARCA1P28370 RNU6-189P-201ENST00000516120 101 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 AC105029.1-201ENST00000520250 669 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 AC090115.3-201ENST00000553218 849 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.82□□□□□ -1.8
SMARCA1P28370 AC037471.2-201ENST00000564941 598 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 AC106782.4-201ENST00000568264 210 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.82□□□□□ -1.8
SMARCA1P28370 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.82□□□□□ -1.8
SMARCA1P28370 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SMARCA1P28370 AL132765.2-201ENST00000610812 351 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 MIR6076-201ENST00000617521 113 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 AL133216.2-202ENST00000634512 349 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 MTND1P37-201ENST00000636562 264 ntBASIC3.82□□□□□ -1.8
SMARCA1P28370 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SMARCA1P28370 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SMARCA1P28370 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
SMARCA1P28370 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.81□□□□□ -1.8
SMARCA1P28370 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SMARCA1P28370 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SMARCA1P28370 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SMARCA1P28370 RNU1-70P-201ENST00000362618 164 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 Y_RNA.301-201ENST00000364990 103 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 MIR578-201ENST00000384828 96 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 U3.19-201ENST00000390893 196 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 RPS4XP3-201ENST00000398541 413 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 RNU4-47P-201ENST00000410876 114 ntBASIC3.81□□□□□ -1.8
SMARCA1P28370 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.81□□□□□ -1.8
SMARCA1P28370 AL365400.1-201ENST00000431854 640 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms