Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.42□□□□□ -2.34
COL6A3P12111 AL034418.1-201ENST00000448675 860 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 AC098862.1-201ENST00000504991 413 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 OR6C73P-201ENST00000546432 358 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 MTND2P17-201ENST00000550281 688 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 AC008751.2-201ENST00000597885 980 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 NUTF2P8-201ENST00000604593 363 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 AC067838.1-201ENST00000606064 577 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
COL6A3P12111 RNA5SP227-201ENST00000516184 113 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 AL157871.3-201ENST00000557231 293 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC0.42□□□□□ -2.34
COL6A3P12111 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC0.42□□□□□ -2.34
COL6A3P12111 AP001485.1-201ENST00000604799 199 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 AL136363.1-201ENST00000605349 337 ntBASIC0.42□□□□□ -2.34
COL6A3P12111 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
COL6A3P12111 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
COL6A3P12111 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
COL6A3P12111 SNORA63D-201ENST00000364359 132 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 SNORA14A-201ENST00000364773 135 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 MIR676-201ENST00000390702 67 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 AP002784.2-201ENST00000397300 549 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.41□□□□□ -2.34
COL6A3P12111 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC0.41□□□□□ -2.34
COL6A3P12111 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.41□□□□□ -2.34
COL6A3P12111 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC0.41□□□□□ -2.34
COL6A3P12111 SNORA1.3-201ENST00000384676 136 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 RNU6-19P-201ENST00000384718 107 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 MIR153-1-201ENST00000384914 90 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
COL6A3P12111 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.41□□□□□ -2.34
COL6A3P12111 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC0.41□□□□□ -2.34
COL6A3P12111 AC091304.9-201ENST00000612091 226 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC0.41□□□□□ -2.34
COL6A3P12111 AC010615.1-201ENST00000594254 1764 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 RNU6-833P-201ENST00000363486 107 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC0.41□□□□□ -2.34
COL6A3P12111 RNU6-1297P-201ENST00000384415 104 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 RPS3AP36-201ENST00000398190 775 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC0.41□□□□□ -2.34
COL6A3P12111 TMEM167AP1-201ENST00000423409 219 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 HSPE1P9-201ENST00000440046 311 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 COX7A2P2-201ENST00000505291 250 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 SCARNA21.1-201ENST00000515996 128 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 RNU6-1247P-201ENST00000516622 98 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.41□□□□□ -2.34
COL6A3P12111 AC109635.4-202ENST00000531666 412 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.41□□□□□ -2.34
COL6A3P12111 AC087685.1-201ENST00000587507 141 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 MIR7515-201ENST00000637837 67 ntBASIC0.41□□□□□ -2.34
COL6A3P12111 AL356131.1-201ENST00000405826 414 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 MTCO3P35-201ENST00000485582 781 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC0.4□□□□□ -2.35
COL6A3P12111 RNU4-57P-201ENST00000515980 135 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AC034114.1-201ENST00000520293 285 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AP003717.3-201ENST00000544832 1180 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AC087897.1-201ENST00000550134 156 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 MIR4645-201ENST00000583158 77 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AC073410.2-201ENST00000603240 332 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 SDAD1P2-201ENST00000441308 2028 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC0.4□□□□□ -2.35
COL6A3P12111 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.4□□□□□ -2.35
COL6A3P12111 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
COL6A3P12111 MIR3681-201ENST00000580089 72 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 MIR3117-201ENST00000584034 78 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 AC008739.2-201ENST00000597006 317 ntBASIC0.4□□□□□ -2.35
COL6A3P12111 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
COL6A3P12111 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
COL6A3P12111 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
COL6A3P12111 AC083875.1-201ENST00000419509 405 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC0.39□□□□□ -2.35
COL6A3P12111 U8.21-201ENST00000459536 136 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 AL133507.1-201ENST00000605269 557 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.39□□□□□ -2.35
COL6A3P12111 AC083865.1-201ENST00000636634 831 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 MTND5P32-201ENST00000560711 1802 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 TOMM22P2-201ENST00000430735 237 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 MTND5P8-201ENST00000449817 1083 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.39□□□□□ -2.35
COL6A3P12111 AC114811.1-201ENST00000507207 168 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.39□□□□□ -2.35
COL6A3P12111 RN7SKP5-201ENST00000517045 272 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 RAC1P9-201ENST00000604990 392 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 PART1_2.1-201ENST00000612397 250 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 Y_RNA.311-201ENST00000365068 96 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 Y_RNA.476-201ENST00000384347 108 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 OR9R1P-201ENST00000412200 877 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 MTND4LP11-201ENST00000422184 280 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC0.39□□□□□ -2.35
COL6A3P12111 PAXBP1P1-201ENST00000449315 447 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 MTATP6P22-201ENST00000507369 598 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 AP005902.1-201ENST00000521358 186 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 AC090616.5-202ENST00000582111 297 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 AC116563.2-201ENST00000624751 535 ntBASIC0.39□□□□□ -2.35
COL6A3P12111 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
COL6A3P12111 RNU6-600P-201ENST00000362524 99 ntBASIC0.38□□□□□ -2.35
COL6A3P12111 Y_RNA.505-201ENST00000384489 102 ntBASIC0.38□□□□□ -2.35
COL6A3P12111 MIR934-201ENST00000401241 83 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms