Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC099842.1-201ENST00000619919 596 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
CCDC88BA6NC98 SNORA50A-201ENST00000384225 134 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 OFD1P18Y-201ENST00000420889 959 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 CST2P1-201ENST00000425770 87 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 GTF2IP20-201ENST00000431663 360 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC88BA6NC98 AL157398.1-201ENST00000452981 186 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 AC136932.1-201ENST00000574771 208 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 AL021997.1-201ENST00000605757 193 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 AL355472.4-201ENST00000610233 626 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.72□□□□□ -2.29
CCDC88BA6NC98 AC008443.7-201ENST00000622195 246 ntBASIC0.72□□□□□ -2.29
CCDC88BA6NC98 RNU6-173P-201ENST00000364215 104 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 RNU6-115P-201ENST00000364310 107 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 Y_RNA.412-201ENST00000384001 104 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 NDUFB4P7-201ENST00000423198 363 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 ARPC3P5-201ENST00000448802 534 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC88BA6NC98 RNU4-57P-201ENST00000515980 135 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 AC004923.2-201ENST00000529649 369 ntBASIC0.71□□□□□ -2.3
CCDC88BA6NC98 RNU6-374P-201ENST00000364146 108 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 RNU6-1164P-201ENST00000364428 107 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 MIR218-1-201ENST00000384999 110 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 AL606490.4-201ENST00000423117 127 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC88BA6NC98 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC88BA6NC98 MTCYBP16-201ENST00000509187 1129 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 AC093677.1-201ENST00000514414 678 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 SNORA70.16-201ENST00000516390 95 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.7□□□□□ -2.3
CCDC88BA6NC98 AC012213.4-201ENST00000606457 354 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 AL138478.1-201ENST00000612252 832 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 Z69720.2-201ENST00000624755 279 ntBASIC0.7□□□□□ -2.3
CCDC88BA6NC98 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC0.7□□□□□ -2.3
CCDC88BA6NC98 Y_RNA.274-201ENST00000364714 101 ntBASIC0.69□□□□□ -2.3
CCDC88BA6NC98 RNU4-31P-201ENST00000384211 141 ntBASIC0.69□□□□□ -2.3
CCDC88BA6NC98 HMGN1P10-201ENST00000474557 553 ntBASIC0.69□□□□□ -2.3
CCDC88BA6NC98 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.69□□□□□ -2.3
CCDC88BA6NC98 AF213884.2-201ENST00000510417 903 ntBASIC0.69□□□□□ -2.3
CCDC88BA6NC98 RNU7-40P-201ENST00000516397 64 ntBASIC0.69□□□□□ -2.3
CCDC88BA6NC98 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.69□□□□□ -2.3
CCDC88BA6NC98 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.69□□□□□ -2.3
CCDC88BA6NC98 RNU6-1243P-201ENST00000364028 107 ntBASIC0.68□□□□□ -2.3
CCDC88BA6NC98 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.68□□□□□ -2.3
CCDC88BA6NC98 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC88BA6NC98 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC0.68□□□□□ -2.3
CCDC88BA6NC98 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.68□□□□□ -2.3
CCDC88BA6NC98 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC88BA6NC98 MIR548Y-201ENST00000582739 110 ntBASIC0.68□□□□□ -2.3
CCDC88BA6NC98 MTCYBP22-201ENST00000603788 447 ntBASIC0.68□□□□□ -2.3
CCDC88BA6NC98 AC138473.1-201ENST00000605717 526 ntBASIC0.68□□□□□ -2.3
CCDC88BA6NC98 AC073308.1-201ENST00000623696 305 ntBASIC0.68□□□□□ -2.3
CCDC88BA6NC98 AL512506.2-201ENST00000624472 458 ntBASIC0.68□□□□□ -2.3
CCDC88BA6NC98 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.67□□□□□ -2.3
CCDC88BA6NC98 Y_RNA.471-201ENST00000384312 102 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AC073614.1-201ENST00000438690 650 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC88BA6NC98 RPL9P9-202ENST00000466501 579 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AC079791.1-201ENST00000605356 973 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AP000654.2-201ENST00000605633 586 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 RMST_5.1-201ENST00000618704 126 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AL121890.5-201ENST00000620848 304 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC88BA6NC98 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
CCDC88BA6NC98 MTCYBP27-201ENST00000555160 670 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 MIR4514-201ENST00000581410 57 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 MIR4653-201ENST00000585107 83 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AC069294.1-201ENST00000608397 350 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AC093838.1-201ENST00000613014 469 ntBASIC0.67□□□□□ -2.3
CCDC88BA6NC98 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC88BA6NC98 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.66□□□□□ -2.3
CCDC88BA6NC98 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.66□□□□□ -2.3
CCDC88BA6NC98 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.66□□□□□ -2.3
CCDC88BA6NC98 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.66□□□□□ -2.3
CCDC88BA6NC98 AC147055.4-201ENST00000504399 745 ntBASIC0.66□□□□□ -2.3
CCDC88BA6NC98 AC114786.4-201ENST00000508771 728 ntBASIC0.66□□□□□ -2.3
CCDC88BA6NC98 AC114797.1-201ENST00000514003 728 ntBASIC0.66□□□□□ -2.3
CCDC88BA6NC98 AC093510.2-201ENST00000562820 896 ntBASIC0.66□□□□□ -2.3
CCDC88BA6NC98 AC005668.1-201ENST00000571142 476 ntBASIC0.66□□□□□ -2.3
CCDC88BA6NC98 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.65□□□□□ -2.31
CCDC88BA6NC98 NDUFS5P1-201ENST00000405668 289 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AC099677.1-201ENST00000420575 175 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 EIF4EP2-201ENST00000422816 654 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AC112492.4-201ENST00000456549 352 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC88BA6NC98 RNU6-902P-201ENST00000517212 91 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AP003327.1-201ENST00000529684 127 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 EEF1B2P4-201ENST00000551398 348 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AC022202.1-201ENST00000613515 211 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AL356585.4-201ENST00000623078 1229 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 AC068057.2-201ENST00000624047 895 ntBASIC0.65□□□□□ -2.31
CCDC88BA6NC98 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.64□□□□□ -2.31
CCDC88BA6NC98 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms