Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 SNRPEP8-201ENST00000442866 260 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 PRPS1P1-201ENST00000445305 876 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 Z75741.1-201ENST00000446793 314 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 RNA5SP310-201ENST00000459084 116 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 RPL21P10-201ENST00000463521 490 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC079140.5-201ENST00000507882 310 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC112206.3-201ENST00000514578 389 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 RNA5SP165-201ENST00000517142 115 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC009902.1-201ENST00000519351 183 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 BTF3P12-201ENST00000519620 469 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC090136.1-201ENST00000520009 240 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AC063943.3-201ENST00000615562 356 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 AL049781.1-201ENST00000623195 3585 ntBASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.2□□□□□ -1.9
TCRBV7S3A2A0A539 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 FTLP6-201ENST00000355274 422 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 SNORA75B-201ENST00000384053 137 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 Y_RNA.480-201ENST00000384364 102 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 RNU6-831P-201ENST00000384548 107 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 RNA5SP219-201ENST00000390940 113 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AP000567.1-201ENST00000406413 156 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 FAT1P1-201ENST00000406588 507 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 RNU6-1025P-201ENST00000410629 104 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 MTND3P8-201ENST00000412909 339 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC245054.2-201ENST00000415639 319 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 RPLP0P7-201ENST00000416050 667 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 PDCL2P1-201ENST00000419302 352 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AL159169.1-201ENST00000421119 127 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AL159987.2-201ENST00000432754 307 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 NDUFA5P4-201ENST00000436704 385 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 NDUFB1P2-201ENST00000449477 176 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 MTND1P11-201ENST00000456661 876 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 RNU6-329P-201ENST00000459618 107 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC083904.1-201ENST00000487828 231 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 SNORA14.1-201ENST00000516113 141 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 CYCSP27-201ENST00000527643 293 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC243972.3-201ENST00000539655 198 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 LRRC37A5P-203ENST00000580181 585 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC007938.3-201ENST00000604965 623 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 SNORA51-201ENST00000606420 132 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC093913.1-201ENST00000614178 329 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 RMST_4.1-201ENST00000616886 107 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC099506.2-201ENST00000623074 221 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 AC099654.5-201ENST00000636479 350 ntBASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
TCRBV7S3A2A0A539 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AF127577.6-201ENST00000623352 2191 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AL355596.1-201ENST00000565399 3996 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 Y_RNA.263-201ENST00000364659 114 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 Y_RNA.414-201ENST00000384011 101 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 SNORA32.2-201ENST00000384049 122 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 RNU2-3P-201ENST00000410144 191 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 HSPE1P1-201ENST00000421494 318 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AC097713.2-201ENST00000430199 356 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 SNRPEP4-201ENST00000435815 279 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AC005019.1-201ENST00000436455 431 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 MTND4LP16-201ENST00000440828 295 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 BRK1P2-201ENST00000442875 223 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AL136097.1-201ENST00000456945 913 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 RN7SL20P-201ENST00000488827 297 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 HMGB1P30-201ENST00000492455 606 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AP002812.1-201ENST00000495378 474 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 TRBVA-201ENST00000498804 316 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 RNU4-49P-201ENST00000516080 140 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 RNU6-1069P-201ENST00000516612 133 ntBASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.18□□□□□ -1.9
TCRBV7S3A2A0A539 AC022690.1-201ENST00000526681 550 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms