Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC068880.5-201ENST00000624331 290 ntBASIC3.06□□□□□ -1.92
ZNF541Q9H0D2 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 Y_RNA.194-201ENST00000363985 102 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 Y_RNA.296-201ENST00000364930 108 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 RNU6-169P-201ENST00000365336 107 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 RNU6-946P-201ENST00000383878 107 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 RNU6-1035P-201ENST00000384477 107 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AC007064.1-201ENST00000412238 351 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AL451074.5-201ENST00000415894 435 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 RPS15AP34-201ENST00000487776 387 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AC023194.1-201ENST00000493084 308 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 RNU6-430P-201ENST00000517078 107 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 RANP3-201ENST00000530970 276 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 RPS3AP4-201ENST00000555161 764 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 HMGB1P14-201ENST00000557424 591 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AL451064.1-201ENST00000607718 471 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AC104073.3-201ENST00000610942 955 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 AL589743.7-201ENST00000612637 233 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 MTND5P19-201ENST00000424872 1794 ntBASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF541Q9H0D2 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 Y_RNA.318-201ENST00000365131 97 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 RNU6-1119P-201ENST00000384349 108 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 MIR181B1-201ENST00000385240 110 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 ZNF90P2-204ENST00000419323 1075 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 VN1R108P-201ENST00000431580 830 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 GPR143P-201ENST00000434155 205 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AC009969.1-201ENST00000438726 172 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AC011816.1-201ENST00000441346 546 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AC079781.2-201ENST00000446424 169 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 CECR9-201ENST00000453421 199 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 MTCO3P7-201ENST00000510008 774 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 Y_RNA.689-201ENST00000516589 107 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 RNU6-1220P-201ENST00000517126 108 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AC103987.3-201ENST00000582071 292 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 MIR3605-201ENST00000583214 100 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AC010620.2-201ENST00000600135 313 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 AC091805.2-201ENST00000603848 235 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 HULC.1-201ENST00000612720 240 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF541Q9H0D2 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 SMIM11P1-201ENST00000369586 178 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 RNU1-73P-201ENST00000383971 164 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 MIR558-201ENST00000384920 94 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 RNA5SP252-201ENST00000391131 119 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 RPS12P24-201ENST00000412619 387 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 MTCO3P41-201ENST00000414801 328 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 NDUFB4P5-201ENST00000415445 361 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC092047.1-201ENST00000424997 240 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC133104.1-201ENST00000429100 218 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 RPL23AP30-201ENST00000432419 501 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AL591212.2-201ENST00000433923 257 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 CACYBPP2-201ENST00000453625 678 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC091179.1-201ENST00000461606 579 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC104472.2-201ENST00000469035 601 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC007182.2-201ENST00000489251 402 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC105252.1-201ENST00000503089 286 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC138853.1-201ENST00000503549 823 ntBASIC3.03□□□□□ -1.92
ZNF541Q9H0D2 AC008716.1-201ENST00000511084 513 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms