Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL353743.1-202ENST00000431724 1695 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC126323.6-202ENST00000568092 3511 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC107068.1-201ENST00000563286 4218 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AP000542.2-201ENST00000623199 6179 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.439-201ENST00000384119 94 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 RNU6-198P-201ENST00000384258 104 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.489-201ENST00000384410 101 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 RNU2-49P-201ENST00000410666 184 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 COX6B1P1-201ENST00000415962 213 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 RPL21P38-201ENST00000418090 167 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 RPL23AP25-201ENST00000430973 463 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 SNORD127-201ENST00000458892 86 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 RNU6-1132P-201ENST00000459214 107 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AP001025.1-201ENST00000486139 332 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 RPL32P34-201ENST00000486380 400 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 MIR2355-201ENST00000517199 87 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AP002770.2-201ENST00000543613 532 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 MTND6P33-201ENST00000571794 183 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 RN7SL435P-201ENST00000584418 282 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC022726.1-201ENST00000587475 207 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC005357.1-201ENST00000588399 301 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AL355877.2-201ENST00000603670 358 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AL356157.2-201ENST00000605122 111 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC023043.4-201ENST00000612081 449 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AC011476.5-201ENST00000615594 130 ntBASIC3.72□□□□□ -1.81
CCDC140Q96MF4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC140Q96MF4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
CCDC140Q96MF4 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
CCDC140Q96MF4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 DHX9P1-201ENST00000436565 3076 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNA5SP443-201ENST00000363083 132 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 Y_RNA.143-201ENST00000363520 106 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNU6-879P-201ENST00000364328 108 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNU6-926P-201ENST00000384075 107 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 MIR585-201ENST00000384887 94 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 MIR153-2-201ENST00000385225 87 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNU2-20P-201ENST00000410425 191 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNU6-121P-201ENST00000410525 99 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNA5SP38-201ENST00000410750 119 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNU2-38P-201ENST00000410856 79 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RPL36AP10-201ENST00000421785 322 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL645608.4-201ENST00000423619 154 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL590762.4-201ENST00000425885 253 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RPL23AP95-201ENST00000426806 265 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL445305.1-201ENST00000432577 575 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RPS15AP5-201ENST00000436276 388 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 SNORA71B-202ENST00000439232 272 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL714022.1-201ENST00000439897 151 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC016700.2-201ENST00000446011 156 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 SSXP4-201ENST00000451349 245 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC016632.1-201ENST00000503994 196 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RNU2-53P-201ENST00000516257 147 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC093023.1-201ENST00000547375 507 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC133555.2-201ENST00000550213 292 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC023824.2-201ENST00000566185 400 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 MIR5699-201ENST00000578903 90 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 FAM27B-201ENST00000610601 213 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 Mico1.1-201ENST00000611698 204 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL359198.2-201ENST00000611836 194 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AC068254.2-201ENST00000623938 3577 ntBASIC3.71□□□□□ -1.82
CCDC140Q96MF4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC140Q96MF4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC140Q96MF4 RNU6-1141P-201ENST00000364520 107 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 Y_RNA.477-201ENST00000384352 108 ntBASIC3.7□□□□□ -1.82
CCDC140Q96MF4 MIR487A-201ENST00000385009 80 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms