Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC118465.1-201ENST00000513820 1271 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 SNORA31.3-201ENST00000516029 96 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 RNU6-201P-201ENST00000517100 61 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC012414.6-201ENST00000568241 401 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 KC877982.1-201ENST00000602313 470 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC092354.1-201ENST00000606057 376 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 OR2AS2P-201ENST00000606902 342 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC090970.3-201ENST00000612566 866 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC008147.4-201ENST00000617570 1204 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC012640.5-201ENST00000623897 319 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC010149.2-201ENST00000637608 315 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 AL109809.4-201ENST00000603520 2185 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.01
VPS39Q96JC1 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 RNU4-21P-201ENST00000362802 126 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 RNU6-14P-201ENST00000384630 106 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 MIR144-201ENST00000384886 86 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 MIR34A-201ENST00000385130 110 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 SNORA26.8-201ENST00000391306 124 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 Y_RNA.608-201ENST00000410647 95 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 USP9YP6-201ENST00000413550 854 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 NPM1P11-201ENST00000417106 855 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 CYCSP46-201ENST00000423569 204 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 PTGES3P4-201ENST00000426243 356 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 RPL23AP45-201ENST00000476406 468 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 RNA5SP356-201ENST00000515972 94 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC007834.2-201ENST00000536310 343 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 HMGN1P30-201ENST00000589286 268 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 AC103710.2-201ENST00000609912 942 ntBASIC2.46□□□□□ -2.02
VPS39Q96JC1 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS39Q96JC1 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS39Q96JC1 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 SNORA5B-201ENST00000363786 132 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 RNU4-1-201ENST00000363925 141 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 NDUFS5P1-201ENST00000405668 289 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 RNA5SP184-201ENST00000411071 108 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 RPS15AP12-201ENST00000419498 388 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 Z99497.1-201ENST00000421282 135 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 AL589872.1-201ENST00000426602 288 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC124916.1-201ENST00000444020 547 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 SSXP1-201ENST00000453640 473 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 RPL23AP41-201ENST00000484754 458 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 RPL22P13-201ENST00000493291 347 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC112204.1-201ENST00000502591 103 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 RN7SKP24-201ENST00000515888 284 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 AP006587.4-201ENST00000526053 529 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 OSBPL9P5-201ENST00000542581 171 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 MIR4319-201ENST00000577285 85 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
VPS39Q96JC1 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC073544.2-201ENST00000601155 540 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC104237.2-201ENST00000612456 443 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC092140.2-201ENST00000618027 521 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 AC099654.13-201ENST00000639774 207 ntBASIC2.45□□□□□ -2.02
VPS39Q96JC1 HSPA8P4-201ENST00000511877 1920 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
VPS39Q96JC1 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 SNORD114-30-201ENST00000364448 72 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 SNORD115.1-201ENST00000391109 76 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 RPL17P50-201ENST00000396131 546 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 SNORD23.1-201ENST00000408212 104 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 ELOCP17-201ENST00000414751 326 ntBASIC2.44□□□□□ -2.02
VPS39Q96JC1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS39Q96JC1 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms