Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.16□□□□□ -1.74
RNF4P78317 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 SNORA20.1-201ENST00000364790 130 ntBASIC4.16□□□□□ -1.74
RNF4P78317 Y_RNA.358-201ENST00000365491 99 ntBASIC4.16□□□□□ -1.74
RNF4P78317 Y_RNA.405-201ENST00000383979 100 ntBASIC4.16□□□□□ -1.74
RNF4P78317 Y_RNA.451-201ENST00000384200 100 ntBASIC4.16□□□□□ -1.74
RNF4P78317 RNU6-72P-201ENST00000384285 79 ntBASIC4.16□□□□□ -1.74
RNF4P78317 Y_RNA.524-201ENST00000384564 100 ntBASIC4.16□□□□□ -1.74
RNF4P78317 Y_RNA.561-201ENST00000384694 100 ntBASIC4.16□□□□□ -1.74
RNF4P78317 Y_RNA.562-201ENST00000384695 113 ntBASIC4.16□□□□□ -1.74
RNF4P78317 AL356387.2-201ENST00000422272 243 ntBASIC4.16□□□□□ -1.74
RNF4P78317 RPL21P91-201ENST00000429231 479 ntBASIC4.16□□□□□ -1.74
RNF4P78317 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.16□□□□□ -1.74
RNF4P78317 Z82210.1-201ENST00000440037 231 ntBASIC4.16□□□□□ -1.74
RNF4P78317 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.16□□□□□ -1.74
RNF4P78317 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.16□□□□□ -1.74
RNF4P78317 RN7SL481P-201ENST00000477764 299 ntBASIC4.16□□□□□ -1.74
RNF4P78317 AC098869.1-201ENST00000481627 292 ntBASIC4.16□□□□□ -1.74
RNF4P78317 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.16□□□□□ -1.74
RNF4P78317 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.16□□□□□ -1.74
RNF4P78317 RNU6-1023P-201ENST00000516137 106 ntBASIC4.16□□□□□ -1.74
RNF4P78317 Vault.1-201ENST00000516474 102 ntBASIC4.16□□□□□ -1.74
RNF4P78317 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.16□□□□□ -1.74
RNF4P78317 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.16□□□□□ -1.74
RNF4P78317 uc_338.32-201ENST00000615087 172 ntBASIC4.16□□□□□ -1.74
RNF4P78317 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.16□□□□□ -1.74
RNF4P78317 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
RNF4P78317 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
RNF4P78317 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
RNF4P78317 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
RNF4P78317 AL359693.1-201ENST00000614959 2407 ntBASIC4.15□□□□□ -1.74
RNF4P78317 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.74
RNF4P78317 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.15□□□□□ -1.74
RNF4P78317 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
RNF4P78317 SNORA7.2-201ENST00000364446 145 ntBASIC4.15□□□□□ -1.75
RNF4P78317 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
RNF4P78317 MIR493-201ENST00000385254 89 ntBASIC4.15□□□□□ -1.75
RNF4P78317 MIR190B-201ENST00000401119 79 ntBASIC4.15□□□□□ -1.75
RNF4P78317 AC016397.1-201ENST00000412463 242 ntBASIC4.15□□□□□ -1.75
RNF4P78317 AL732292.1-201ENST00000426692 226 ntBASIC4.15□□□□□ -1.75
RNF4P78317 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.15□□□□□ -1.75
RNF4P78317 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.15□□□□□ -1.75
RNF4P78317 AL445433.1-201ENST00000457507 257 ntBASIC4.15□□□□□ -1.75
RNF4P78317 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
RNF4P78317 OR51K1P-201ENST00000510214 950 ntBASIC4.15□□□□□ -1.75
RNF4P78317 RNA5SP446-201ENST00000515955 82 ntBASIC4.15□□□□□ -1.75
RNF4P78317 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.15□□□□□ -1.75
RNF4P78317 AC006077.1-201ENST00000604746 343 ntBASIC4.15□□□□□ -1.75
RNF4P78317 AL356218.2-201ENST00000605264 187 ntBASIC4.15□□□□□ -1.75
RNF4P78317 AC008962.1-201ENST00000605729 304 ntBASIC4.15□□□□□ -1.75
RNF4P78317 U4.7-201ENST00000638126 106 ntBASIC4.15□□□□□ -1.75
RNF4P78317 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
RNF4P78317 AC010300.1-201ENST00000600671 5134 ntBASIC4.15□□□□□ -1.75
RNF4P78317 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
RNF4P78317 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.15□□□□□ -1.75
RNF4P78317 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
RNF4P78317 AL136964.1-201ENST00000622038 2990 ntBASIC4.14□□□□□ -1.75
RNF4P78317 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
RNF4P78317 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
RNF4P78317 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
RNF4P78317 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.14□□□□□ -1.75
RNF4P78317 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
RNF4P78317 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
RNF4P78317 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
RNF4P78317 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.14□□□□□ -1.75
RNF4P78317 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
RNF4P78317 Y_RNA.183-201ENST00000363882 113 ntBASIC4.14□□□□□ -1.75
RNF4P78317 RNU6-611P-201ENST00000384276 104 ntBASIC4.14□□□□□ -1.75
RNF4P78317 SNORA12.2-201ENST00000391040 156 ntBASIC4.14□□□□□ -1.75
RNF4P78317 U3.22-201ENST00000391120 215 ntBASIC4.14□□□□□ -1.75
RNF4P78317 RNU6-1093P-201ENST00000391194 107 ntBASIC4.14□□□□□ -1.75
RNF4P78317 TMSB10P2-201ENST00000416049 131 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AL132765.1-201ENST00000434165 553 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.14□□□□□ -1.75
RNF4P78317 AC009220.1-201ENST00000451614 275 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.14□□□□□ -1.75
RNF4P78317 RN7SKP210-201ENST00000459176 261 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC010469.2-201ENST00000496412 480 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC146944.2-203ENST00000502493 354 ntBASIC4.14□□□□□ -1.75
RNF4P78317 HMGB3P17-201ENST00000504195 649 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC020593.1-201ENST00000507399 299 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC139495.1-202ENST00000513164 354 ntBASIC4.14□□□□□ -1.75
RNF4P78317 SNORA31.18-201ENST00000517043 134 ntBASIC4.14□□□□□ -1.75
RNF4P78317 IGLVIV-65-201ENST00000517313 360 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.14□□□□□ -1.75
RNF4P78317 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.14□□□□□ -1.75
RNF4P78317 MIR4277-201ENST00000578298 84 ntBASIC4.14□□□□□ -1.75
RNF4P78317 MIR4284-201ENST00000578924 81 ntBASIC4.14□□□□□ -1.75
RNF4P78317 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.14□□□□□ -1.75
RNF4P78317 AC012433.1-201ENST00000588916 398 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC141273.2-201ENST00000618989 130 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC091905.2-201ENST00000623143 306 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC097372.5-201ENST00000623665 376 ntBASIC4.14□□□□□ -1.75
RNF4P78317 AC112200.1-201ENST00000625015 234 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 143.5 ms