Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC136475.10-201ENST00000620253 385 ntBASIC2.59□□□□□ -1.99
CDX1P47902 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.59□□□□□ -1.99
CDX1P47902 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.59□□□□□ -1.99
CDX1P47902 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.59□□□□□ -2
CDX1P47902 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
CDX1P47902 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.58□□□□□ -2
CDX1P47902 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CDX1P47902 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.58□□□□□ -2
CDX1P47902 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.58□□□□□ -2
CDX1P47902 SNORA68.1-201ENST00000364537 132 ntBASIC2.58□□□□□ -2
CDX1P47902 SNORA75B-201ENST00000384053 137 ntBASIC2.58□□□□□ -2
CDX1P47902 RNU6-1029P-201ENST00000384109 107 ntBASIC2.58□□□□□ -2
CDX1P47902 MIR147B-201ENST00000390185 80 ntBASIC2.58□□□□□ -2
CDX1P47902 U3.26-201ENST00000391236 204 ntBASIC2.58□□□□□ -2
CDX1P47902 RPL21P75-201ENST00000396599 483 ntBASIC2.58□□□□□ -2
CDX1P47902 RPL21P28-201ENST00000401418 483 ntBASIC2.58□□□□□ -2
CDX1P47902 AL592114.1-201ENST00000403842 483 ntBASIC2.58□□□□□ -2
CDX1P47902 Y_RNA.623-201ENST00000411128 95 ntBASIC2.58□□□□□ -2
CDX1P47902 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.58□□□□□ -2
CDX1P47902 MTATP6P18-201ENST00000417994 673 ntBASIC2.58□□□□□ -2
CDX1P47902 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.58□□□□□ -2
CDX1P47902 PTGES3P4-201ENST00000426243 356 ntBASIC2.58□□□□□ -2
CDX1P47902 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.58□□□□□ -2
CDX1P47902 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.58□□□□□ -2
CDX1P47902 AC073464.1-201ENST00000429823 534 ntBASIC2.58□□□□□ -2
CDX1P47902 MYL8P-204ENST00000431574 518 ntBASIC2.58□□□□□ -2
CDX1P47902 AC002486.1-201ENST00000435098 391 ntBASIC2.58□□□□□ -2
CDX1P47902 RPS15AP9-201ENST00000439856 381 ntBASIC2.58□□□□□ -2
CDX1P47902 MTND1P18-201ENST00000448191 573 ntBASIC2.58□□□□□ -2
CDX1P47902 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.58□□□□□ -2
CDX1P47902 AL162395.1-201ENST00000457882 422 ntBASIC2.58□□□□□ -2
CDX1P47902 RPL21P39-201ENST00000463605 483 ntBASIC2.58□□□□□ -2
CDX1P47902 RPS27AP9-201ENST00000477681 438 ntBASIC2.58□□□□□ -2
CDX1P47902 RPL21P93-201ENST00000480465 489 ntBASIC2.58□□□□□ -2
CDX1P47902 AC087190.1-201ENST00000484462 480 ntBASIC2.58□□□□□ -2
CDX1P47902 AC093591.1-201ENST00000491435 481 ntBASIC2.58□□□□□ -2
CDX1P47902 RPL21P16-201ENST00000495531 483 ntBASIC2.58□□□□□ -2
CDX1P47902 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.58□□□□□ -2
CDX1P47902 AC117522.3-201ENST00000507974 584 ntBASIC2.58□□□□□ -2
CDX1P47902 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.58□□□□□ -2
CDX1P47902 RN7SKP43-201ENST00000516173 320 ntBASIC2.58□□□□□ -2
CDX1P47902 RNU6-405P-201ENST00000516637 110 ntBASIC2.58□□□□□ -2
CDX1P47902 RNU6-826P-201ENST00000516827 104 ntBASIC2.58□□□□□ -2
CDX1P47902 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.58□□□□□ -2
CDX1P47902 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.58□□□□□ -2
CDX1P47902 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.58□□□□□ -2
CDX1P47902 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.58□□□□□ -2
CDX1P47902 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.58□□□□□ -2
CDX1P47902 AL391813.1-201ENST00000603098 260 ntBASIC2.58□□□□□ -2
CDX1P47902 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.58□□□□□ -2
CDX1P47902 AL645944.1-201ENST00000603857 493 ntBASIC2.58□□□□□ -2
CDX1P47902 AC025449.1-201ENST00000603896 529 ntBASIC2.58□□□□□ -2
CDX1P47902 AC091152.3-201ENST00000604227 325 ntBASIC2.58□□□□□ -2
CDX1P47902 AC019159.1-201ENST00000605094 187 ntBASIC2.58□□□□□ -2
CDX1P47902 AC008945.2-201ENST00000606056 604 ntBASIC2.58□□□□□ -2
CDX1P47902 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.58□□□□□ -2
CDX1P47902 AL442067.2-201ENST00000614033 363 ntBASIC2.58□□□□□ -2
CDX1P47902 AL157817.1-201ENST00000614264 790 ntBASIC2.58□□□□□ -2
CDX1P47902 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.58□□□□□ -2
CDX1P47902 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.58□□□□□ -2
CDX1P47902 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.58□□□□□ -2
CDX1P47902 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
CDX1P47902 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.58□□□□□ -2
CDX1P47902 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
CDX1P47902 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
CDX1P47902 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.57□□□□□ -2
CDX1P47902 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
CDX1P47902 RN7SKP226-201ENST00000364912 300 ntBASIC2.57□□□□□ -2
CDX1P47902 SNORA9-201ENST00000384215 133 ntBASIC2.57□□□□□ -2
CDX1P47902 MIR578-201ENST00000384828 96 ntBASIC2.57□□□□□ -2
CDX1P47902 MIR491-201ENST00000384877 84 ntBASIC2.57□□□□□ -2
CDX1P47902 MIR627-201ENST00000384979 97 ntBASIC2.57□□□□□ -2
CDX1P47902 FO393413.1-201ENST00000402892 195 ntBASIC2.57□□□□□ -2
CDX1P47902 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.57□□□□□ -2
CDX1P47902 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.57□□□□□ -2
CDX1P47902 AC016907.1-201ENST00000419483 435 ntBASIC2.57□□□□□ -2
CDX1P47902 AL451074.3-201ENST00000437709 472 ntBASIC2.57□□□□□ -2
CDX1P47902 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.57□□□□□ -2
CDX1P47902 RPL23AP20-201ENST00000447965 421 ntBASIC2.57□□□□□ -2
CDX1P47902 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.57□□□□□ -2
CDX1P47902 AL441985.1-201ENST00000457727 251 ntBASIC2.57□□□□□ -2
CDX1P47902 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 RNU5F-8P-201ENST00000515941 111 ntBASIC2.57□□□□□ -2
CDX1P47902 FAM92A1P1-201ENST00000528023 890 ntBASIC2.57□□□□□ -2
CDX1P47902 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.57□□□□□ -2
CDX1P47902 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 AC092325.1-201ENST00000566449 554 ntBASIC2.57□□□□□ -2
CDX1P47902 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 MIR5680-201ENST00000577577 84 ntBASIC2.57□□□□□ -2
CDX1P47902 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.57□□□□□ -2
CDX1P47902 OR1M4P-201ENST00000589199 287 ntBASIC2.57□□□□□ -2
CDX1P47902 AL161756.2-201ENST00000604597 246 ntBASIC2.57□□□□□ -2
CDX1P47902 YPEL5P2-201ENST00000605553 359 ntBASIC2.57□□□□□ -2
CDX1P47902 AC103591.3-201ENST00000608684 209 ntBASIC2.57□□□□□ -2
CDX1P47902 AL591516.1-201ENST00000611326 274 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms