Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU6-1315P-201ENST00000517187 99 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 SUB1P1-201ENST00000524415 382 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.26□□□□□ -1.89
PTPN9P43378 AP003122.3-201ENST00000526316 255 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 AC084851.1-201ENST00000529105 249 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.26□□□□□ -1.89
PTPN9P43378 AMZ2P1-203ENST00000565833 850 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PTPN9P43378 AL158032.1-201ENST00000605401 106 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 AL020991.1-201ENST00000612314 373 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 AC010338.1-201ENST00000621823 717 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 AP003122.6-201ENST00000623831 495 ntBASIC3.26□□□□□ -1.89
PTPN9P43378 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.26□□□□□ -1.89
PTPN9P43378 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTPN9P43378 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
PTPN9P43378 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.26□□□□□ -1.89
PTPN9P43378 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN9P43378 U3.6-201ENST00000363622 211 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 RNU6-512P-201ENST00000364438 103 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
PTPN9P43378 AL592114.1-201ENST00000403842 483 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AL606923.1-201ENST00000406616 190 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN9P43378 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN9P43378 OR9R1P-201ENST00000412200 877 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 NDUFB4P5-201ENST00000415445 361 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AL353678.1-201ENST00000422735 741 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 ZNF863P-201ENST00000426746 417 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN9P43378 SRIP2-201ENST00000428470 166 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AL592045.1-201ENST00000429867 352 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AC092573.2-201ENST00000434546 243 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.25□□□□□ -1.89
PTPN9P43378 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN9P43378 AL590664.1-201ENST00000448065 339 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 NFU1P2-201ENST00000448700 469 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.25□□□□□ -1.89
PTPN9P43378 AC104136.1-201ENST00000512969 394 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN9P43378 AC118273.2-201ENST00000532092 465 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AL163153.1-201ENST00000554223 283 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN9P43378 MIR4474-201ENST00000579189 78 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.25□□□□□ -1.89
PTPN9P43378 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN9P43378 AL670379.4-201ENST00000605279 254 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 YPEL5P2-201ENST00000605553 359 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.25□□□□□ -1.89
PTPN9P43378 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN9P43378 AL138880.2-201ENST00000616214 239 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 MIR3662-201ENST00000637030 95 ntBASIC3.25□□□□□ -1.89
PTPN9P43378 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN9P43378 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PTPN9P43378 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
PTPN9P43378 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN9P43378 ASNSP3-201ENST00000451989 1306 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AL355596.1-201ENST00000565399 3996 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.24□□□□□ -1.89
PTPN9P43378 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 Y_RNA.157-201ENST00000363638 102 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 SNORD15B-201ENST00000384714 146 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PTPN9P43378 UBE2V1P2-201ENST00000397758 440 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 EEF1A1P40-201ENST00000412883 573 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.24□□□□□ -1.89
PTPN9P43378 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.24□□□□□ -1.89
PTPN9P43378 RPL36AP53-201ENST00000432891 316 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AC009969.1-201ENST00000438726 172 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 SUMO2P6-201ENST00000505273 288 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AC116353.2-201ENST00000505332 712 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 MTND4P7-201ENST00000523876 130 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.24□□□□□ -1.89
PTPN9P43378 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.24□□□□□ -1.89
PTPN9P43378 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.24□□□□□ -1.89
PTPN9P43378 MTCO3P23-201ENST00000561363 289 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 MIR1273C-201ENST00000578669 77 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 UBL5P2-201ENST00000583788 219 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.24□□□□□ -1.89
PTPN9P43378 AC060780.3-201ENST00000589464 80 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 RMST_3.1-201ENST00000611651 109 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
PTPN9P43378 AC068831.7-201ENST00000616954 363 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 uc_338.34-201ENST00000617467 174 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AC099506.2-201ENST00000623074 221 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AL512643.1-201ENST00000635735 524 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 Z99571.1-201ENST00000636677 394 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 AC024614.3-201ENST00000637860 256 ntBASIC3.24□□□□□ -1.89
PTPN9P43378 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN9P43378 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN9P43378 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN9P43378 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
PTPN9P43378 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
PTPN9P43378 OR4G1P-203ENST00000641984 1631 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 MTND5P7-201ENST00000413558 1798 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN9P43378 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PTPN9P43378 RNU6-82P-201ENST00000363970 107 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 Y_RNA.231-201ENST00000364358 102 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 RNU6-395P-201ENST00000365662 106 ntBASIC3.23□□□□□ -1.89
PTPN9P43378 RNU6-116P-201ENST00000384042 109 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms