Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.67□□□□□ -1.98
SOX3P41225 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
SOX3P41225 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SOX3P41225 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.67□□□□□ -1.98
SOX3P41225 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
SOX3P41225 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.66□□□□□ -1.98
SOX3P41225 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SOX3P41225 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
SOX3P41225 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
SOX3P41225 FTLP6-201ENST00000355274 422 ntBASIC2.66□□□□□ -1.98
SOX3P41225 SNORA62.1-201ENST00000364287 154 ntBASIC2.66□□□□□ -1.98
SOX3P41225 Y_RNA.409-201ENST00000383990 98 ntBASIC2.66□□□□□ -1.98
SOX3P41225 SNORA18.3-201ENST00000384122 132 ntBASIC2.66□□□□□ -1.98
SOX3P41225 Y_RNA.481-201ENST00000384373 102 ntBASIC2.66□□□□□ -1.98
SOX3P41225 Y_RNA.576-201ENST00000384781 102 ntBASIC2.66□□□□□ -1.98
SOX3P41225 MIR181A1-201ENST00000385026 110 ntBASIC2.66□□□□□ -1.98
SOX3P41225 MIR634-201ENST00000385208 97 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.66□□□□□ -1.98
SOX3P41225 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.66□□□□□ -1.98
SOX3P41225 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.66□□□□□ -1.98
SOX3P41225 AL591704.1-201ENST00000432574 275 ntBASIC2.66□□□□□ -1.98
SOX3P41225 FABP5P13-201ENST00000452144 328 ntBASIC2.66□□□□□ -1.98
SOX3P41225 CECR9-201ENST00000453421 199 ntBASIC2.66□□□□□ -1.98
SOX3P41225 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.66□□□□□ -1.98
SOX3P41225 AC027673.1-201ENST00000456245 405 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.66□□□□□ -1.98
SOX3P41225 RPL21P8-201ENST00000465083 535 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.66□□□□□ -1.98
SOX3P41225 AC109927.2-201ENST00000506416 303 ntBASIC2.66□□□□□ -1.98
SOX3P41225 ARL4AP2-201ENST00000507378 601 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC098591.2-201ENST00000510152 315 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC009646.1-201ENST00000510455 318 ntBASIC2.66□□□□□ -1.98
SOX3P41225 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.66□□□□□ -1.98
SOX3P41225 RNU6-314P-201ENST00000516574 104 ntBASIC2.66□□□□□ -1.98
SOX3P41225 RNU6-914P-201ENST00000516749 109 ntBASIC2.66□□□□□ -1.98
SOX3P41225 RNU6-143P-201ENST00000516942 93 ntBASIC2.66□□□□□ -1.98
SOX3P41225 RNU6-685P-201ENST00000517088 95 ntBASIC2.66□□□□□ -1.98
SOX3P41225 SNORA31.26-201ENST00000517250 137 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.66□□□□□ -1.98
SOX3P41225 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.66□□□□□ -1.98
SOX3P41225 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC007536.1-201ENST00000533382 349 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.66□□□□□ -1.98
SOX3P41225 ZNF519P2-201ENST00000557032 169 ntBASIC2.66□□□□□ -1.98
SOX3P41225 TPRKBP2-201ENST00000565969 475 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC008536.2-201ENST00000607284 349 ntBASIC2.66□□□□□ -1.98
SOX3P41225 uc_338.11-201ENST00000619132 160 ntBASIC2.66□□□□□ -1.98
SOX3P41225 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.66□□□□□ -1.98
SOX3P41225 AL157786.1-207ENST00000627771 695 ntBASIC2.66□□□□□ -1.98
SOX3P41225 U6.114-201ENST00000636407 96 ntBASIC2.66□□□□□ -1.98
SOX3P41225 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.66□□□□□ -1.98
SOX3P41225 AC096644.4-201ENST00000563417 2912 ntBASIC2.66□□□□□ -1.98
SOX3P41225 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
SOX3P41225 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
SOX3P41225 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.65□□□□□ -1.98
SOX3P41225 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SOX3P41225 RNU6-1158P-201ENST00000391167 107 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AC068050.1-201ENST00000394891 380 ntBASIC2.65□□□□□ -1.99
SOX3P41225 MIR887-201ENST00000401258 79 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AL031121.1-201ENST00000406553 254 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AL031779.1-201ENST00000415663 330 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
SOX3P41225 MTCYBP5-201ENST00000423752 1135 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AL592045.1-201ENST00000429867 352 ntBASIC2.65□□□□□ -1.99
SOX3P41225 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.65□□□□□ -1.99
SOX3P41225 SNRPEP9-201ENST00000436794 238 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.65□□□□□ -1.99
SOX3P41225 DPPA3P1-201ENST00000448050 469 ntBASIC2.65□□□□□ -1.99
SOX3P41225 NIPA2P5-201ENST00000452282 464 ntBASIC2.65□□□□□ -1.99
SOX3P41225 GSTA11P-201ENST00000452866 669 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AC006512.1-201ENST00000468816 291 ntBASIC2.65□□□□□ -1.99
SOX3P41225 RPL23AP11-201ENST00000475260 469 ntBASIC2.65□□□□□ -1.99
SOX3P41225 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.65□□□□□ -1.99
SOX3P41225 RBBP4P6-201ENST00000508098 202 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.65□□□□□ -1.99
SOX3P41225 AC104383.1-201ENST00000530297 370 ntBASIC2.65□□□□□ -1.99
SOX3P41225 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.65□□□□□ -1.99
SOX3P41225 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
SOX3P41225 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
SOX3P41225 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.65□□□□□ -1.99
SOX3P41225 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.65□□□□□ -1.99
SOX3P41225 AC078899.3-201ENST00000599065 212 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AC024153.1-201ENST00000603103 365 ntBASIC2.65□□□□□ -1.99
SOX3P41225 AC004805.2-201ENST00000605382 482 ntBASIC2.65□□□□□ -1.99
SOX3P41225 MIR15A-201ENST00000607334 83 ntBASIC2.65□□□□□ -1.99
SOX3P41225 CR381653.2-201ENST00000624041 768 ntBASIC2.65□□□□□ -1.99
SOX3P41225 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.65□□□□□ -1.99
SOX3P41225 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.65□□□□□ -1.99
SOX3P41225 AC068137.3-201ENST00000639191 341 ntBASIC2.65□□□□□ -1.99
SOX3P41225 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.65□□□□□ -1.99
SOX3P41225 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.65□□□□□ -1.99
SOX3P41225 AC073869.6-201ENST00000640656 341 ntBASIC2.65□□□□□ -1.99
SOX3P41225 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.65□□□□□ -1.99
SOX3P41225 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
SOX3P41225 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.65□□□□□ -1.99
SOX3P41225 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
SOX3P41225 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SOX3P41225 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.64□□□□□ -1.99
SOX3P41225 OR4G2P-201ENST00000328113 903 ntBASIC2.64□□□□□ -1.99
SOX3P41225 RNU6-1085P-201ENST00000363576 107 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms