Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-254P-201ENST00000363377 107 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD9P28356 Y_RNA.399-201ENST00000383955 105 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 RNU6-882P-201ENST00000391025 103 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 MIR548P-201ENST00000408336 84 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 RNU2-43P-201ENST00000410306 190 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 RNU4-14P-201ENST00000410858 122 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 AC126124.2-201ENST00000413542 321 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC074085.1-201ENST00000413598 418 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD9P28356 SSXP9-201ENST00000417503 292 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD9P28356 RPS15AP27-201ENST00000449183 343 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC115115.1-201ENST00000449927 248 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 RPL23AP67-201ENST00000465341 474 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD9P28356 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD9P28356 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 MTND5P5-201ENST00000503764 376 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXD9P28356 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 PHBP14-201ENST00000512887 367 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 RNU6-189P-201ENST00000516120 101 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 RNU6-256P-201ENST00000516747 97 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 IGKV2D-23-201ENST00000518179 286 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC107934.2-201ENST00000518653 310 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AP006587.4-201ENST00000526053 529 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD9P28356 MTCO3P23-201ENST00000561363 289 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD9P28356 AC092747.3-201ENST00000603769 301 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 SNRPGP17-201ENST00000603780 214 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 DPPA3P3-201ENST00000603842 430 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AL162713.1-201ENST00000604480 262 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC073657.2-201ENST00000605661 303 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD9P28356 AL589994.2-201ENST00000621124 579 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 AC058791.1-201ENST00000608412 3198 ntBASIC3.41□□□□□ -1.86
HOXD9P28356 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD9P28356 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.4□□□□□ -1.86
HOXD9P28356 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.4□□□□□ -1.86
HOXD9P28356 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.4□□□□□ -1.86
HOXD9P28356 MIR30E-201ENST00000362104 92 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 RNU1-70P-201ENST00000362618 164 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 SNORA38.1-201ENST00000364172 131 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 SNORD6-201ENST00000365444 73 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD9P28356 RNU6-701P-201ENST00000384059 107 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 MIR483-201ENST00000385070 76 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD9P28356 NDUFS5P1-201ENST00000405668 289 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 MTND2P23-201ENST00000422990 651 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD9P28356 BRK1P2-201ENST00000442875 223 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD9P28356 AC107399.1-201ENST00000451226 265 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 NIPA2P5-201ENST00000452282 464 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD9P28356 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXD9P28356 RPL7P43-201ENST00000478876 753 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD9P28356 AC110794.1-201ENST00000505816 425 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD9P28356 AC005741.1-201ENST00000511094 432 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD9P28356 RNU1-61P-201ENST00000516107 151 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 RNU6-327P-201ENST00000516270 127 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 RNU6-1045P-201ENST00000516321 107 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXD9P28356 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD9P28356 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXD9P28356 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HOXD9P28356 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD9P28356 AL163153.1-201ENST00000554223 283 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 TGIF1P1-201ENST00000558095 802 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 MIR3672-201ENST00000584290 82 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AC023043.2-201ENST00000589678 1026 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AL138889.2-201ENST00000603883 242 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AP001836.1-201ENST00000604675 523 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AL360085.1-201ENST00000604713 532 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 AC009570.1-201ENST00000609599 745 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 MIR8057-201ENST00000620957 69 ntBASIC3.4□□□□□ -1.87
HOXD9P28356 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXD9P28356 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD9P28356 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
HOXD9P28356 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
HOXD9P28356 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXD9P28356 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXD9P28356 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD9P28356 AC017071.1-201ENST00000564407 2204 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HOXD9P28356 Y_RNA.132-201ENST00000363421 102 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 SNORA4.3-201ENST00000365564 137 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms