Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.33□□□□□ -2.04
SDC1P18827 AC063976.3-201ENST00000426849 329 ntBASIC2.33□□□□□ -2.04
SDC1P18827 RPL31P35-201ENST00000431058 377 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AL591704.1-201ENST00000432574 275 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AL353706.1-201ENST00000436728 494 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AC073614.1-201ENST00000438690 650 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AC098831.1-201ENST00000440661 216 ntBASIC2.33□□□□□ -2.04
SDC1P18827 MTATP6P7-201ENST00000453315 681 ntBASIC2.33□□□□□ -2.04
SDC1P18827 MTCYBP1-201ENST00000454315 1119 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.33□□□□□ -2.04
SDC1P18827 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.33□□□□□ -2.04
SDC1P18827 AC107626.1-201ENST00000471084 183 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AC109927.2-201ENST00000506416 303 ntBASIC2.33□□□□□ -2.04
SDC1P18827 SEM1P1-201ENST00000506694 209 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AC113155.1-201ENST00000511141 769 ntBASIC2.33□□□□□ -2.04
SDC1P18827 RNU6-143P-201ENST00000516942 93 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AC090572.1-201ENST00000519251 160 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.33□□□□□ -2.04
SDC1P18827 AC174048.1-201ENST00000603389 144 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AL049779.4-201ENST00000604500 156 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AL121992.2-201ENST00000606262 256 ntBASIC2.33□□□□□ -2.04
SDC1P18827 MIR15A-201ENST00000607334 83 ntBASIC2.33□□□□□ -2.04
SDC1P18827 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC1P18827 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
SDC1P18827 MTND4P35-201ENST00000604257 1375 ntBASIC2.33□□□□□ -2.04
SDC1P18827 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC1P18827 AC069528.2-201ENST00000624849 1991 ntBASIC2.32□□□□□ -2.04
SDC1P18827 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
SDC1P18827 AC062016.1-201ENST00000355719 319 ntBASIC2.32□□□□□ -2.04
SDC1P18827 Y_RNA.201-201ENST00000364052 96 ntBASIC2.32□□□□□ -2.04
SDC1P18827 RNY1P12-201ENST00000364251 105 ntBASIC2.32□□□□□ -2.04
SDC1P18827 RNU6-641P-201ENST00000384006 107 ntBASIC2.32□□□□□ -2.04
SDC1P18827 RNU1-138P-201ENST00000384093 164 ntBASIC2.32□□□□□ -2.04
SDC1P18827 SNORA24.1-201ENST00000384401 135 ntBASIC2.32□□□□□ -2.04
SDC1P18827 RNU6-750P-201ENST00000390946 107 ntBASIC2.32□□□□□ -2.04
SDC1P18827 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.32□□□□□ -2.04
SDC1P18827 MTND3P17-201ENST00000416968 344 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AL513477.1-202ENST00000417061 214 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AL358075.3-201ENST00000426289 226 ntBASIC2.32□□□□□ -2.04
SDC1P18827 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.32□□□□□ -2.04
SDC1P18827 CR769767.1-201ENST00000436337 346 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AC244505.5-201ENST00000443639 207 ntBASIC2.32□□□□□ -2.04
SDC1P18827 USP9YP29-201ENST00000445112 563 ntBASIC2.32□□□□□ -2.04
SDC1P18827 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC1P18827 FABP5P13-201ENST00000452144 328 ntBASIC2.32□□□□□ -2.04
SDC1P18827 RPL23AP45-201ENST00000476406 468 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AC004924.1-201ENST00000480160 781 ntBASIC2.32□□□□□ -2.04
SDC1P18827 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC1P18827 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.32□□□□□ -2.04
SDC1P18827 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.32□□□□□ -2.04
SDC1P18827 AC098591.2-201ENST00000510152 315 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AC108078.2-201ENST00000510750 236 ntBASIC2.32□□□□□ -2.04
SDC1P18827 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.32□□□□□ -2.04
SDC1P18827 RNU6-1315P-201ENST00000517187 99 ntBASIC2.32□□□□□ -2.04
SDC1P18827 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC1P18827 MIR4319-201ENST00000577285 85 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.32□□□□□ -2.04
SDC1P18827 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC1P18827 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.32□□□□□ -2.04
SDC1P18827 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC1P18827 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.32□□□□□ -2.04
SDC1P18827 AL137843.1-201ENST00000605078 385 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AL137847.3-201ENST00000611521 109 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AC006386.2-201ENST00000624491 75 ntBASIC2.32□□□□□ -2.04
SDC1P18827 AC012005.1-201ENST00000624575 75 ntBASIC2.32□□□□□ -2.04
SDC1P18827 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
SDC1P18827 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
SDC1P18827 ZNF271P-202ENST00000465539 1970 ntBASIC2.32□□□□□ -2.04
SDC1P18827 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.32□□□□□ -2.04
SDC1P18827 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
SDC1P18827 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SDC1P18827 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
SDC1P18827 MIR21-201ENST00000362134 72 ntBASIC2.31□□□□□ -2.04
SDC1P18827 RNA5SP393-201ENST00000363423 117 ntBASIC2.31□□□□□ -2.04
SDC1P18827 RNU6-1180P-201ENST00000364935 107 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 AC096664.2-201ENST00000411843 406 ntBASIC2.31□□□□□ -2.04
SDC1P18827 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.31□□□□□ -2.04
SDC1P18827 COTL1P1-201ENST00000422309 375 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 AL136380.1-201ENST00000447970 162 ntBASIC2.31□□□□□ -2.04
SDC1P18827 HMGN2P10-201ENST00000448085 265 ntBASIC2.31□□□□□ -2.04
SDC1P18827 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.31□□□□□ -2.04
SDC1P18827 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
SDC1P18827 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 SCARNA17.1-201ENST00000516211 143 ntBASIC2.31□□□□□ -2.04
SDC1P18827 SCARNA17.2-201ENST00000516334 143 ntBASIC2.31□□□□□ -2.04
SDC1P18827 RNU6-1183P-201ENST00000517054 60 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AC025755.1-201ENST00000521306 278 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AL356057.1-201ENST00000533798 831 ntBASIC2.31□□□□□ -2.04
SDC1P18827 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
SDC1P18827 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.31□□□□□ -2.04
SDC1P18827 AC087883.1-201ENST00000551882 391 ntBASIC2.31□□□□□ -2.04
SDC1P18827 NACAP3-201ENST00000552100 481 ntBASIC2.31□□□□□ -2.04
SDC1P18827 EIF4BP1-201ENST00000554881 351 ntBASIC2.31□□□□□ -2.04
SDC1P18827 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC1P18827 AC021739.1-201ENST00000559631 174 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms