Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AL161798.1-201ENST00000604630 131 ntBASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 AC130324.3-201ENST00000614165 542 ntBASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 AL158063.1-201ENST00000615349 536 ntBASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 MIR6766-201ENST00000622641 72 ntBASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 AC110994.2-201ENST00000635481 492 ntBASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.84□□□□□ -2.11
TRAV40A0A0B4J280 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.84□□□□□ -2.12
TRAV40A0A0B4J280 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
TRAV40A0A0B4J280 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 SDAD1P2-201ENST00000441308 2028 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC005336.3-201ENST00000623833 2679 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 UBE2L2-201ENST00000254302 429 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 FGF7P2-201ENST00000332473 296 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 Y_RNA.22-201ENST00000362492 102 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 RNY4P24-201ENST00000362735 96 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-1167P-201ENST00000363227 94 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-884P-201ENST00000363889 107 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 RNU1-138P-201ENST00000384093 164 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-1035P-201ENST00000384477 107 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 SKA2P1-201ENST00000425592 390 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL356867.1-201ENST00000429623 299 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC009961.2-201ENST00000435771 251 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 HMGN2P20-201ENST00000437531 273 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 RPS15AP9-201ENST00000439856 381 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 Z82210.1-201ENST00000440037 231 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL360221.1-201ENST00000445989 335 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AP000852.1-201ENST00000472460 573 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 SUMO2P6-201ENST00000505273 288 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 OR5BM1P-201ENST00000512021 366 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-927P-201ENST00000516199 100 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 Y_RNA.672-201ENST00000516289 104 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 SCARNA24.1-201ENST00000516465 137 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 SNORD59.2-201ENST00000516873 68 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC026464.5-201ENST00000562497 722 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL590229.1-201ENST00000603497 542 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AC004805.2-201ENST00000605382 482 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL121992.2-201ENST00000606262 256 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 AL451064.1-201ENST00000607718 471 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 MIR6132-201ENST00000622083 109 ntBASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC1.83□□□□□ -2.12
TRAV40A0A0B4J280 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 MIR21-201ENST00000362134 72 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 SNORD56.2-201ENST00000363242 71 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-1284P-201ENST00000363701 100 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-169P-201ENST00000365336 107 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-282P-201ENST00000365357 103 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 SNORA11.4-201ENST00000408823 129 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC023141.4-201ENST00000412031 328 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 SEPT2P1-201ENST00000419651 180 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AL592045.1-201ENST00000429867 352 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RPL31P35-201ENST00000431058 377 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RPL23AP30-201ENST00000432419 501 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 MTND4P32-201ENST00000437189 1237 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 NEFMP1-201ENST00000443423 1006 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 FDX1P2-201ENST00000450769 375 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 TPT1P7-201ENST00000458300 517 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-420P-201ENST00000458780 107 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RPS20P22-201ENST00000473700 357 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 UBL5P3-201ENST00000475112 231 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC008716.1-201ENST00000511084 513 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 RNU6-1282P-201ENST00000516735 96 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AL391261.3-201ENST00000557194 520 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC006362.1-201ENST00000567392 174 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC040904.1-201ENST00000590850 223 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC064872.1-201ENST00000604823 1072 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 AC135507.1-201ENST00000607214 561 ntBASIC1.82□□□□□ -2.12
TRAV40A0A0B4J280 FTX_3.1-201ENST00000610451 147 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms