Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Prpf40aQ9R1C7 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 AC069562.2-201ENSMUST00000224644 2146 ntBASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Prpf40aQ9R1C7 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Gm7977-201ENSMUST00000193787 748 ntBASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Prpf40aQ9R1C7 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Prpf40aQ9R1C7 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Prpf40aQ9R1C7 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Prpf40aQ9R1C7 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms