Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Vps53Q8CCB4 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps53Q8CCB4 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.84■□□□□ 0.61
Vps53Q8CCB4 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Vps53Q8CCB4 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.84■□□□□ 0.61
Vps53Q8CCB4 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vps53Q8CCB4 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.84■□□□□ 0.61
Vps53Q8CCB4 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Vps53Q8CCB4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vps53Q8CCB4 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Vps53Q8CCB4 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Vps53Q8CCB4 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vps53Q8CCB4 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vps53Q8CCB4 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Vps53Q8CCB4 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.82■□□□□ 0.6
Vps53Q8CCB4 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Vps53Q8CCB4 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Olfr129-201ENSMUST00000122318 993 ntBASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vps53Q8CCB4 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms