Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Hmgb3O54879 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC13.49□□□□□ -0.25
Hmgb3O54879 Gm19430-201ENSMUST00000193847 2137 ntBASIC13.49□□□□□ -0.25
Hmgb3O54879 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC13.49□□□□□ -0.25
Hmgb3O54879 AL590614.2-201ENSMUST00000225374 1937 ntBASIC13.49□□□□□ -0.25
Hmgb3O54879 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Hmgb3O54879 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
Hmgb3O54879 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Hmgb3O54879 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Hmgb3O54879 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
Hmgb3O54879 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC13.48□□□□□ -0.25
Hmgb3O54879 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
Hmgb3O54879 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC13.48□□□□□ -0.25
Hmgb3O54879 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC13.48□□□□□ -0.25
Hmgb3O54879 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Hmgb3O54879 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Hmgb3O54879 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Gm9867-201ENSMUST00000192212 2647 ntBASIC13.47□□□□□ -0.25
Hmgb3O54879 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC13.47□□□□□ -0.25
Hmgb3O54879 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Hmgb3O54879 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC13.47□□□□□ -0.25
Hmgb3O54879 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC13.47□□□□□ -0.25
Hmgb3O54879 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
Hmgb3O54879 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Hmgb3O54879 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Hmgb3O54879 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Hmgb3O54879 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Hmgb3O54879 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Hmgb3O54879 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
Hmgb3O54879 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
Hmgb3O54879 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Hmgb3O54879 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC13.46□□□□□ -0.26
Hmgb3O54879 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Hmgb3O54879 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Hmgb3O54879 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Hmgb3O54879 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Hmgb3O54879 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Hmgb3O54879 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms