Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AL133243.3-201ENST00000617415 3004 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-338P-201ENST00000383888 105 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 Y_RNA.539-201ENST00000384635 107 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 MIR628-201ENST00000385229 95 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 SNORA57.1-201ENST00000391227 145 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AL591034.2-201ENST00000402839 359 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AL159987.2-201ENST00000432754 307 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 RPL23AP46-201ENST00000438548 490 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 RPL29P29-201ENST00000448725 423 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-406P-201ENST00000516470 107 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC034114.1-201ENST00000520293 285 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 TRAV37-201ENST00000553906 342 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 HMGB1P14-201ENST00000557424 591 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC022655.2-201ENST00000577280 318 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 MIR5701-3-201ENST00000578890 82 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 MIR5701-1-201ENST00000585138 82 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC006557.5-201ENST00000603126 811 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 MIR6867-201ENST00000610636 67 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 DLEU2_2.2-201ENST00000615474 90 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 MIR5701-2-201ENST00000615634 82 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AP001282.2-201ENST00000616149 309 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 RMST_4.1-201ENST00000616886 107 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 RNA5SP196-201ENST00000625967 102 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC022893.2-201ENST00000564832 3296 ntBASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.26□□□□□ -1.57
CHMP3Q9Y3E7 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AP000560.1-201ENST00000624150 1937 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RPL9P7-201ENST00000330965 580 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-212P-201ENST00000362642 104 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-37P-201ENST00000362692 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-11P-201ENST00000364234 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-7-201ENST00000364784 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-8-201ENST00000365467 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-25P-201ENST00000383873 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-1-201ENST00000383898 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-48P-201ENST00000384161 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-36P-201ENST00000384172 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-4P-201ENST00000384205 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-5P-201ENST00000384238 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 Y_RNA.462-201ENST00000384268 102 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-3P-201ENST00000384314 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-16P-201ENST00000384385 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-15P-201ENST00000384534 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-2-201ENST00000384627 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-29P-201ENST00000384637 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-9-201ENST00000384776 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-33P-201ENST00000384793 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 MIR215-201ENST00000384858 110 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 MIR521-1-201ENST00000384902 87 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU2-14P-201ENST00000411053 191 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AL513043.1-201ENST00000439124 535 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AC073587.1-201ENST00000447093 876 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RPL9P9-202ENST00000466501 579 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RPL23AP65-201ENST00000475608 468 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 MIR892C-201ENST00000516410 77 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-1315P-201ENST00000517187 99 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 IGLV3-26-201ENST00000520756 302 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNU6-6P-201ENST00000606623 107 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 ZNF299P-201ENST00000406845 1804 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 FAM91A3P-201ENST00000456826 2544 ntBASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.25□□□□□ -1.57
CHMP3Q9Y3E7 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 Y_RNA.20-201ENST00000362479 113 ntBASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 RNA5SP283-201ENST00000365604 119 ntBASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 Y_RNA.478-201ENST00000384358 107 ntBASIC5.24□□□□□ -1.57
CHMP3Q9Y3E7 RNA5SP372-201ENST00000390836 115 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms