Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-39P-201ENST00000384344 107 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 RNU6-851P-201ENST00000384565 107 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 RNU6-658P-201ENST00000384606 106 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 AC127391.1-201ENST00000411737 98 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 AC007064.1-201ENST00000412238 351 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.54□□□□□ -2
DDX28Q9NUL7 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.54□□□□□ -2
DDX28Q9NUL7 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.54□□□□□ -2
DDX28Q9NUL7 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.54□□□□□ -2
DDX28Q9NUL7 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.54□□□□□ -2
DDX28Q9NUL7 RPL23AP30-201ENST00000432419 501 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 AC009296.1-201ENST00000443146 155 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 MRPL50P4-201ENST00000446432 475 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 AL136380.1-201ENST00000447970 162 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.54□□□□□ -2
DDX28Q9NUL7 HMGN2P10-201ENST00000448085 265 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.54□□□□□ -2
DDX28Q9NUL7 Y_RNA.689-201ENST00000516589 107 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 RNU6-914P-201ENST00000516749 109 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.54□□□□□ -2
DDX28Q9NUL7 AC022616.3-201ENST00000523940 148 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.54□□□□□ -2
DDX28Q9NUL7 AC021739.1-201ENST00000559631 174 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 MIR3167-201ENST00000579623 85 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.54□□□□□ -2
DDX28Q9NUL7 AL133173.2-201ENST00000614270 90 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 PISRT1-201ENST00000626175 531 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 AL512643.1-201ENST00000635735 524 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.54□□□□□ -2
DDX28Q9NUL7 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
DDX28Q9NUL7 AC010889.1-201ENST00000566193 2666 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.53□□□□□ -2
DDX28Q9NUL7 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.53□□□□□ -2
DDX28Q9NUL7 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 RNY4P34-201ENST00000364779 95 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 RNU6-190P-201ENST00000384154 102 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 RNY3P9-201ENST00000384727 106 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 MIR558-201ENST00000384920 94 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 RPS4XP7-201ENST00000406274 780 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AL109913.1-201ENST00000421173 514 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 MED13P1-201ENST00000428342 171 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 OSTCP8-201ENST00000445117 448 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.53□□□□□ -2
DDX28Q9NUL7 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 TRBV1-201ENST00000476502 284 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AC109927.2-201ENST00000506416 303 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 AC098591.2-201ENST00000510152 315 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 Vault.3-201ENST00000516676 95 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.53□□□□□ -2
DDX28Q9NUL7 AC007151.1-201ENST00000572774 483 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
DDX28Q9NUL7 AC024153.1-201ENST00000603103 365 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 AC006023.1-201ENST00000603944 259 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 FARSBP1-201ENST00000435808 1778 ntBASIC2.53□□□□□ -2
DDX28Q9NUL7 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 RN7SKP226-201ENST00000364912 300 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 SNORA4.3-201ENST00000365564 137 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 RNU6-1072P-201ENST00000384703 107 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 RNU6-443P-201ENST00000384780 107 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 MIR512-1-201ENST00000384913 84 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AL513475.1-201ENST00000406602 315 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 RNA5SP181-201ENST00000410246 98 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 RNU2-39P-201ENST00000410604 198 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC009961.2-201ENST00000435771 251 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC104850.1-201ENST00000435940 476 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AL513043.1-201ENST00000439124 535 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 GAPDHP17-201ENST00000449858 1001 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC004924.1-201ENST00000480160 781 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC083906.5-201ENST00000503722 328 ntBASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.52□□□□□ -2.01
DDX28Q9NUL7 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms