Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC080014.1-201ENST00000496877 1201 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 RNU6-276P-201ENST00000516114 96 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 SNORA48.11-201ENST00000517015 89 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AP005639.2-201ENST00000527592 928 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 OR5AL2P-201ENST00000532185 920 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 MIR4419B-201ENST00000577260 68 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AL596327.1-201ENST00000603629 213 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC005034.5-201ENST00000604219 466 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC092953.2-201ENST00000608000 699 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC103710.1-201ENST00000610003 901 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 PART1_2.1-201ENST00000612397 250 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 AC005296.1-201ENST00000616145 209 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 MIR6873-201ENST00000622788 63 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 Z99571.1-201ENST00000636677 394 ntBASIC1.7□□□□□ -2.14
VCX3AQ9NNX9 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC008555.8-201ENST00000623602 2168 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 RNU6-1284P-201ENST00000363701 100 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 RNU6-1257P-201ENST00000384625 110 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 MIR518D-201ENST00000385014 87 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 BTF3P7-201ENST00000407097 488 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 RN7SKP266-201ENST00000410232 287 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC107083.1-201ENST00000439643 279 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AL360221.1-201ENST00000445989 335 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AP001486.1-201ENST00000463339 476 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AL672167.3-201ENST00000465951 960 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 RPL7P43-201ENST00000478876 753 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC011825.1-201ENST00000484967 388 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 RNU6-572P-201ENST00000516724 80 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 OR5B19P-201ENST00000531766 928 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 LINC00933-203ENST00000559812 219 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AL358072.1-201ENST00000604156 575 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 Y_RNA.783-201ENST00000613546 102 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AC006133.1-201ENST00000617106 264 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 AP000776.1-201ENST00000530032 1663 ntBASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
VCX3AQ9NNX9 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 Y_RNA.192-201ENST00000363977 102 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 ERHP2-201ENST00000402323 299 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AL136310.1-201ENST00000404926 654 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC127391.1-201ENST00000411737 98 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AL158823.1-201ENST00000418441 478 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC083875.1-201ENST00000419509 405 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 USP9YP24-201ENST00000434374 697 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 MTND4P25-201ENST00000441039 533 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 RPL23AP6-201ENST00000446637 472 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 FAM92A1P2-202ENST00000504766 877 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC116353.3-201ENST00000511215 249 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AP003122.3-201ENST00000526316 255 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC084851.1-201ENST00000529105 249 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 DEFB108A-201ENST00000530110 222 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 PSMA3P-201ENST00000555485 635 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC009712.1-201ENST00000564938 316 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AL078605.1-201ENST00000603529 500 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AL670379.10-201ENST00000604330 253 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AL670379.9-201ENST00000605428 253 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC107952.2-201ENST00000606048 486 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 BX323046.1-201ENST00000610145 535 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC006386.1-201ENST00000619436 415 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 AC017037.3-201ENST00000625016 472 ntBASIC1.68□□□□□ -2.14
VCX3AQ9NNX9 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 RNU6-288P-201ENST00000363690 104 ntBASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 AC068050.1-201ENST00000394891 380 ntBASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 RNU2-20P-201ENST00000410425 191 ntBASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 RNA5SP184-201ENST00000411071 108 ntBASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 AC244636.1-201ENST00000421152 228 ntBASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC1.67□□□□□ -2.14
VCX3AQ9NNX9 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms