Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.59□□□□□ -1.99
RNF41Q9H4P4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.59□□□□□ -1.99
RNF41Q9H4P4 RPS3AP4-201ENST00000555161 764 ntBASIC2.59□□□□□ -1.99
RNF41Q9H4P4 AC005771.1-201ENST00000585581 349 ntBASIC2.59□□□□□ -1.99
RNF41Q9H4P4 AL137847.3-201ENST00000611521 109 ntBASIC2.59□□□□□ -1.99
RNF41Q9H4P4 AC104237.2-201ENST00000612456 443 ntBASIC2.59□□□□□ -1.99
RNF41Q9H4P4 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
RNF41Q9H4P4 ELL2P3-201ENST00000457883 1602 ntBASIC2.59□□□□□ -1.99
RNF41Q9H4P4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.58□□□□□ -2
RNF41Q9H4P4 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.58□□□□□ -2
RNF41Q9H4P4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
RNF41Q9H4P4 MIRLET7G-201ENST00000362280 84 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 SNORD116-2-201ENST00000384274 95 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 SNORD116-6-201ENST00000384711 96 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 RN7SKP223-201ENST00000410582 62 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.58□□□□□ -2
RNF41Q9H4P4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.58□□□□□ -2
RNF41Q9H4P4 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.58□□□□□ -2
RNF41Q9H4P4 AC010153.1-201ENST00000432862 727 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AC009961.2-201ENST00000435771 251 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 HMGB3P12-201ENST00000438745 556 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.58□□□□□ -2
RNF41Q9H4P4 USP9YP15-201ENST00000442391 422 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.58□□□□□ -2
RNF41Q9H4P4 SNRPFP4-201ENST00000456366 242 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.58□□□□□ -2
RNF41Q9H4P4 AC117532.1-201ENST00000514638 323 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 Y_RNA.672-201ENST00000516289 104 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 RNA5SP402-201ENST00000517148 110 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.58□□□□□ -2
RNF41Q9H4P4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.58□□□□□ -2
RNF41Q9H4P4 AP000867.2-201ENST00000532468 320 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.58□□□□□ -2
RNF41Q9H4P4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.58□□□□□ -2
RNF41Q9H4P4 BNIP3P8-201ENST00000597863 560 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AL161729.4-201ENST00000604650 476 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AC034102.8-201ENST00000615146 484 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AL158063.1-201ENST00000615349 536 ntBASIC2.58□□□□□ -2
RNF41Q9H4P4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.58□□□□□ -2
RNF41Q9H4P4 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.58□□□□□ -2
RNF41Q9H4P4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
RNF41Q9H4P4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.58□□□□□ -2
RNF41Q9H4P4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
RNF41Q9H4P4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
RNF41Q9H4P4 SNORD116-9-201ENST00000384000 95 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 RNU6-701P-201ENST00000384059 107 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 RNU6-301P-201ENST00000384277 107 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SNORD116-3-201ENST00000384287 95 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SNORD116-7-201ENST00000384404 95 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SNORD116-5-201ENST00000384462 95 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SNORA40.3-201ENST00000390964 122 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 RPL23AP32-201ENST00000395315 459 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 NDUFS5P1-201ENST00000405668 289 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SNORA11.4-201ENST00000408823 129 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.57□□□□□ -2
RNF41Q9H4P4 BX682237.1-201ENST00000415016 335 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.57□□□□□ -2
RNF41Q9H4P4 RPS15AP12-201ENST00000419498 388 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SEPT2P1-201ENST00000419651 180 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 DPH3P2-201ENST00000422618 250 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 HMGN2P30-201ENST00000423237 256 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AC007283.2-201ENST00000424739 197 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AL139415.2-201ENST00000431968 163 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.57□□□□□ -2
RNF41Q9H4P4 RPL32P28-201ENST00000443577 397 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 MTATP6P26-201ENST00000445926 662 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 GAPDHP17-201ENST00000449858 1001 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.57□□□□□ -2
RNF41Q9H4P4 AL033528.1-201ENST00000453780 140 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.57□□□□□ -2
RNF41Q9H4P4 AC013267.1-201ENST00000458227 267 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.57□□□□□ -2
RNF41Q9H4P4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.57□□□□□ -2
RNF41Q9H4P4 AC093534.1-201ENST00000504977 132 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 RAC1P5-201ENST00000512182 576 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AC091965.2-201ENST00000512324 613 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.57□□□□□ -2
RNF41Q9H4P4 RNA5SP471-201ENST00000516971 106 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
RNF41Q9H4P4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
RNF41Q9H4P4 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.57□□□□□ -2
RNF41Q9H4P4 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.57□□□□□ -2
RNF41Q9H4P4 MIR3167-201ENST00000579623 85 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AC002545.1-201ENST00000592511 181 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AL358072.1-201ENST00000604156 575 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AC013562.2-201ENST00000611632 603 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 AC108479.2-201ENST00000617314 601 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.57□□□□□ -2
RNF41Q9H4P4 ZNF271P-202ENST00000465539 1970 ntBASIC2.57□□□□□ -2
RNF41Q9H4P4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.57□□□□□ -2
RNF41Q9H4P4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.56□□□□□ -2
RNF41Q9H4P4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
RNF41Q9H4P4 Y_RNA.77-201ENST00000362962 107 ntBASIC2.56□□□□□ -2
RNF41Q9H4P4 SMIM11P1-201ENST00000369586 178 ntBASIC2.56□□□□□ -2
RNF41Q9H4P4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.56□□□□□ -2
RNF41Q9H4P4 RN7SKP142-201ENST00000411236 328 ntBASIC2.56□□□□□ -2
RNF41Q9H4P4 AC099548.1-201ENST00000421443 426 ntBASIC2.56□□□□□ -2
RNF41Q9H4P4 AC007919.1-201ENST00000429380 217 ntBASIC2.56□□□□□ -2
RNF41Q9H4P4 SUMO1P4-201ENST00000429430 302 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms