Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-61P-201ENST00000365528 109 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 RNU6-641P-201ENST00000384006 107 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 RNU6-198P-201ENST00000384258 104 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 SNORA24.1-201ENST00000384401 135 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 RN7SKP123-201ENST00000410732 291 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 BMS1P22-201ENST00000414726 313 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC092809.3-201ENST00000415453 231 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 DLGAP5P1-201ENST00000430307 464 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.51□□□□□ -2.01
LIME1Q9H400 AL513124.1-201ENST00000450410 614 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.51□□□□□ -2.01
LIME1Q9H400 AC108078.2-201ENST00000510750 236 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC008413.1-201ENST00000511864 177 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 RNA5SP76-201ENST00000516277 87 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AP003122.3-201ENST00000526316 255 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC084851.1-201ENST00000529105 249 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LIME1Q9H400 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.51□□□□□ -2.01
LIME1Q9H400 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.51□□□□□ -2.01
LIME1Q9H400 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.51□□□□□ -2.01
LIME1Q9H400 AC098848.2-201ENST00000588023 330 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC022893.3-201ENST00000607665 437 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC004832.5-201ENST00000608677 401 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC012409.4-201ENST00000612923 249 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.51□□□□□ -2.01
LIME1Q9H400 AC009161.2-201ENST00000624626 138 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.51□□□□□ -2.01
LIME1Q9H400 MTND5P26-201ENST00000426018 1752 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC110774.1-201ENST00000623567 2018 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 AC103710.2-202ENST00000641454 2853 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LIME1Q9H400 AC091564.4-201ENST00000533934 2194 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.5□□□□□ -2.01
LIME1Q9H400 ASNSP3-201ENST00000451989 1306 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.5□□□□□ -2.01
LIME1Q9H400 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.5□□□□□ -2.01
LIME1Q9H400 RNU5A-6P-201ENST00000384136 116 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
LIME1Q9H400 AL590004.2-201ENST00000404787 371 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LIME1Q9H400 AC080125.1-201ENST00000414888 684 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.5□□□□□ -2.01
LIME1Q9H400 BTF3L4P3-201ENST00000418879 476 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.5□□□□□ -2.01
LIME1Q9H400 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.5□□□□□ -2.01
LIME1Q9H400 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.5□□□□□ -2.01
LIME1Q9H400 AL589823.1-201ENST00000429577 183 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AL592045.1-201ENST00000429867 352 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AL591212.2-201ENST00000433923 257 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 RPS15AP9-201ENST00000439856 381 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 CECR9-201ENST00000453421 199 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 RPL12P25-201ENST00000455592 494 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 Y_RNA.638-201ENST00000459374 113 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AC091179.1-201ENST00000461606 579 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 MRPS17P3-201ENST00000465453 385 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 RPS26P21-201ENST00000475397 348 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 SUMO2P6-201ENST00000505273 288 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AC116562.3-201ENST00000506136 177 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 Y_RNA.655-201ENST00000515919 96 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 RNU4-29P-201ENST00000515943 174 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 RNU1-41P-201ENST00000516161 162 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 RNU1-48P-201ENST00000516400 162 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.5□□□□□ -2.01
LIME1Q9H400 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LIME1Q9H400 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.5□□□□□ -2.01
LIME1Q9H400 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.5□□□□□ -2.01
LIME1Q9H400 AC068587.5-201ENST00000528506 175 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 OR5BN1P-201ENST00000532955 829 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC2.5□□□□□ -2.01
LIME1Q9H400 AC078795.2-201ENST00000602835 1252 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 AC004805.2-201ENST00000605382 482 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LIME1Q9H400 DUSP12P1-201ENST00000612874 516 ntBASIC2.5□□□□□ -2.01
LIME1Q9H400 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LIME1Q9H400 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
LIME1Q9H400 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
LIME1Q9H400 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.49□□□□□ -2.01
LIME1Q9H400 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LIME1Q9H400 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LIME1Q9H400 RNU6-778P-201ENST00000363269 103 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 RNU6-288P-201ENST00000363690 104 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 U3.12-201ENST00000364498 214 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LIME1Q9H400 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
LIME1Q9H400 RNU6-259P-201ENST00000383999 107 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 MIR454-201ENST00000390180 115 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 GSTA9P-201ENST00000406231 611 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AL031779.1-201ENST00000415663 330 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AL451074.5-201ENST00000415894 435 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AC114491.1-201ENST00000416095 246 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.49□□□□□ -2.01
LIME1Q9H400 MTCO2P19-201ENST00000427513 598 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 AC093151.1-201ENST00000427711 313 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 GPM6BP2-201ENST00000432046 144 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 GPM6BP1-201ENST00000446387 144 ntBASIC2.49□□□□□ -2.01
LIME1Q9H400 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.49□□□□□ -2.01
LIME1Q9H400 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.49□□□□□ -2.01
LIME1Q9H400 AC022364.2-201ENST00000457963 554 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms