Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC010099.1-201ENST00000455434 375 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 RNU7-23P-201ENST00000459465 62 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC116562.3-201ENST00000506136 177 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 SCARNA24.1-201ENST00000516465 137 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 RNU6-445P-201ENST00000516949 107 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC068587.5-201ENST00000528506 175 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AP000889.1-201ENST00000530968 660 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 TRAV37-201ENST00000553906 342 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 EIF1P4-201ENST00000572664 335 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC005951.1-201ENST00000576706 485 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC006023.1-201ENST00000603944 259 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AL355598.1-201ENST00000604169 202 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AL136363.1-201ENST00000605349 337 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AC013562.2-201ENST00000611632 603 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AP001486.3-201ENST00000615334 372 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AL359740.1-201ENST00000624340 592 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP44Q9H0E7 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP44Q9H0E7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 AL079305.1-201ENST00000623159 3008 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 AL365361.1-201ENST00000566942 3481 ntBASIC3.32□□□□□ -1.88
USP44Q9H0E7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.32□□□□□ -1.88
USP44Q9H0E7 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP44Q9H0E7 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 API5P2-201ENST00000397055 1498 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP44Q9H0E7 RNU6-859P-201ENST00000362728 107 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 RNU6-179P-201ENST00000363350 107 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 RN7SKP226-201ENST00000364912 300 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 GSTA9P-201ENST00000406231 611 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 RNU2-68P-201ENST00000410878 191 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 ZNF885P-201ENST00000420174 1098 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 HMGB1P9-201ENST00000429856 646 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 DPPA3P1-201ENST00000448050 469 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 MTND4LP22-201ENST00000508209 276 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 RNA5SP282-201ENST00000516355 108 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 AC090136.1-201ENST00000520009 240 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 AP000867.2-201ENST00000532468 320 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 NACAP3-201ENST00000552100 481 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 DNAJC8P1-201ENST00000554535 372 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 MIR4635-201ENST00000583759 79 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 AL022154.1-201ENST00000604698 785 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 DUSP12P1-201ENST00000612874 516 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 AL161629.2-201ENST00000615347 275 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.31□□□□□ -1.88
USP44Q9H0E7 LRRC77P-213ENST00000637727 880 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USP44Q9H0E7 MAPK10-322ENST00000641485 4530 ntBASIC3.31□□□□□ -1.88
USP44Q9H0E7 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC008669.1-201ENST00000565823 2178 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 FTLP6-201ENST00000355274 422 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 Y_RNA.22-201ENST00000362492 102 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 Y_RNA.296-201ENST00000364930 108 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 RNU6-198P-201ENST00000384258 104 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 Y_RNA.505-201ENST00000384489 102 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AL139397.2-201ENST00000404529 772 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 NDUFS5P4-201ENST00000412983 318 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 RPL23AP30-201ENST00000432419 501 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AL591212.2-201ENST00000433923 257 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC003071.1-201ENST00000451219 789 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC093899.1-201ENST00000457984 376 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 RNU4-29P-201ENST00000515943 174 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 SNORD27.1-201ENST00000516319 72 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AP003033.1-201ENST00000527244 415 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 OR4R1P-201ENST00000529879 463 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 ADI1P3-201ENST00000549509 470 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 AL359212.1-201ENST00000556608 614 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 RPL12P50-201ENST00000603116 116 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
USP44Q9H0E7 OR5AK4P-201ENST00000635912 903 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 AC103710.2-202ENST00000641454 2853 ntBASIC3.3□□□□□ -1.88
USP44Q9H0E7 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP44Q9H0E7 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP44Q9H0E7 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP44Q9H0E7 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP44Q9H0E7 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms