Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.58□□□□□ -1.84
CHMP4AQ9BY43 MTND5P19-201ENST00000424872 1794 ntBASIC3.58□□□□□ -1.84
CHMP4AQ9BY43 AC092593.1-201ENST00000515413 1815 ntBASIC3.58□□□□□ -1.84
CHMP4AQ9BY43 SNORD56.2-201ENST00000363242 71 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AL360182.1-201ENST00000397433 468 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AL138827.1-201ENST00000402666 306 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 RPS4XP7-201ENST00000406274 780 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 RPL23AP30-201ENST00000432419 501 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AL353706.1-201ENST00000436728 494 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 RPS24P1-201ENST00000438550 371 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 USP9YP15-201ENST00000442391 422 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 MTND5P2-201ENST00000442927 1142 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 RPL7P12-201ENST00000446719 750 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 NDUFB1P2-201ENST00000449477 176 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 ASNSP3-201ENST00000451989 1306 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 RNU6-581P-201ENST00000516214 105 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 RNA5SP337-201ENST00000517007 109 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AL391813.2-201ENST00000609113 322 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 AP006437.1-201ENST00000641440 3685 ntBASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHMP4AQ9BY43 SNORA5B-201ENST00000363786 132 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AL139039.1-201ENST00000401900 692 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 RN7SKP158-201ENST00000410453 326 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 RNA5SP184-201ENST00000411071 108 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AC011233.1-201ENST00000422812 283 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AP001486.1-201ENST00000463339 476 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AL049873.1-201ENST00000480540 376 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 MTAPP1-201ENST00000489154 819 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 CKS1BP2-201ENST00000497342 240 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AF213884.2-201ENST00000510417 903 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 RNA5SP82-201ENST00000516707 92 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 SNORA31.15-201ENST00000516771 132 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AP003122.4-201ENST00000530980 758 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 MTATP6P24-201ENST00000576835 677 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AC087683.2-201ENST00000611384 326 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 AL020991.1-201ENST00000612314 373 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 MIR3529-201ENST00000637713 78 ntBASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.56□□□□□ -1.84
CHMP4AQ9BY43 Z98749.2-208ENST00000381646 500 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 SNORA18.3-201ENST00000384122 132 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 RNU6-166P-201ENST00000384371 107 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 MIR518D-201ENST00000385014 87 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 RNU6-387P-201ENST00000411331 105 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC127391.1-201ENST00000411737 98 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 MED13P1-201ENST00000428342 171 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC004383.1-201ENST00000438135 289 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC012308.1-201ENST00000451232 178 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC133134.1-201ENST00000466800 359 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AP000797.1-201ENST00000478870 387 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC117522.2-201ENST00000510049 657 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC022878.1-201ENST00000530684 149 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AL138976.2-201ENST00000563989 694 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC068276.1-201ENST00000605793 379 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AL139286.2-201ENST00000606838 396 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC092656.1-203ENST00000624134 423 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AC092192.1-201ENST00000633154 1018 ntBASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CHMP4AQ9BY43 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 RNY1P12-201ENST00000364251 105 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 RNU6-487P-201ENST00000365430 104 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 Y_RNA.510-201ENST00000384511 114 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AF274854.1-201ENST00000413236 615 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 UBE2D3P1-201ENST00000436669 444 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AC025750.2-201ENST00000442609 450 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AC068587.2-201ENST00000478386 781 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AP004217.1-201ENST00000480579 346 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 OR4R1P-201ENST00000529879 463 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 ADI1P3-201ENST00000549509 470 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 PSMA3P-201ENST00000555485 635 ntBASIC3.54□□□□□ -1.84
CHMP4AQ9BY43 AC009094.1-201ENST00000564443 426 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms