Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-512P-201ENST00000364438 103 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 RNA5SP125-201ENST00000364843 120 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 RNU5E-5P-201ENST00000365379 116 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 U8.8-201ENST00000365399 135 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 RNU6-19P-201ENST00000384718 107 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 MIR147B-201ENST00000390185 80 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 RNU6-278P-201ENST00000390945 109 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AL139039.1-201ENST00000401900 692 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AF274854.1-201ENST00000413236 615 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 EIF4EP4-201ENST00000424916 578 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 RPS3AP44-201ENST00000425466 790 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC063976.3-201ENST00000426849 329 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 RPL22P17-201ENST00000438729 315 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 UBE2D3P4-201ENST00000441973 436 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AP000936.2-201ENST00000447151 681 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 SNORD109B-201ENST00000458961 67 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 SNORD109A-201ENST00000459128 67 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 MTCO2P6-201ENST00000463134 685 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AP000797.1-201ENST00000478870 387 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC096576.1-201ENST00000489014 359 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 RNA5SP82-201ENST00000516707 92 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AP003122.4-201ENST00000530980 758 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 ARL2BPP2-201ENST00000550907 489 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC105245.1-201ENST00000581934 244 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC012065.4-201ENST00000602445 679 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC006338.1-201ENST00000618453 749 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 U4.3-201ENST00000621047 82 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 AC091931.1-201ENST00000623488 728 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 MIR203B-201ENST00000636080 86 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.49□□□□□ -2.01
VPS39Q96JC1 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS39Q96JC1 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
VPS39Q96JC1 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.49□□□□□ -2.01
VPS39Q96JC1 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
VPS39Q96JC1 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS39Q96JC1 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS39Q96JC1 NACAP2-201ENST00000318548 624 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 RNU6-486P-201ENST00000363116 107 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 RNA5SP181-201ENST00000410246 98 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC107081.1-201ENST00000414975 361 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 MTND2P18-201ENST00000419962 1030 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC003685.2-201ENST00000422795 395 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC019097.1-201ENST00000424783 735 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 ARL5AP4-201ENST00000430731 512 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 Z98742.2-201ENST00000431564 187 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC098826.1-201ENST00000433943 471 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 BET1P1-201ENST00000482276 359 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC109486.1-201ENST00000486833 374 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 RPF2P2-201ENST00000504693 896 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 RNA5SP112-201ENST00000515937 99 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC106038.2-201ENST00000520706 568 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 AL121821.2-201ENST00000556081 394 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AL133241.1-201ENST00000556832 487 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 RPS3AP23-202ENST00000574601 686 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 AL603755.1-201ENST00000619504 163 ntBASIC2.48□□□□□ -2.01
VPS39Q96JC1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
VPS39Q96JC1 RNU6-1284P-201ENST00000363701 100 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 RNU6-701P-201ENST00000384059 107 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 SNORA41-201ENST00000384675 132 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 MIR27B-201ENST00000385129 97 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 MIR23A-201ENST00000385245 73 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 MT-TH-201ENST00000387441 69 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 RNU2-36P-201ENST00000410361 191 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 RNU2-52P-201ENST00000410680 190 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 ZNF90P2-204ENST00000419323 1075 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC007283.2-201ENST00000424739 197 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AL353777.1-201ENST00000425552 326 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 RPS6P15-201ENST00000431996 751 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 MTND1P30-201ENST00000441241 901 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 RPS27AP8-201ENST00000452665 445 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 KLF3P2-201ENST00000465138 268 ntBASIC2.47□□□□□ -2.01
VPS39Q96JC1 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS39Q96JC1 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms