Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP295-201ENST00000362655 121 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.153-201ENST00000363615 91 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 RNU6-512P-201ENST00000364438 103 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.252-201ENST00000364556 101 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP22-201ENST00000365393 109 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 CRP-203ENST00000368111 512 ntTSL 3 BASIC4□□□□□ -1.77
CLIP3Q96DZ5 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 SNORD116-11-201ENST00000383882 92 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.463-201ENST00000384271 102 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 RNU6-601P-201ENST00000384540 107 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 SNORA1.3-201ENST00000384676 136 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 MIR325-201ENST00000385260 98 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 SNORD66.1-201ENST00000391230 76 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 RPS4XP3-201ENST00000398541 413 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 RNU6-847P-201ENST00000411115 108 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 POLHP1-201ENST00000411806 470 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 AC092047.1-201ENST00000424997 240 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 HSPD1P21-201ENST00000436541 245 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 RPL12P25-201ENST00000455592 494 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 AL132838.2-201ENST00000492041 314 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4□□□□□ -1.77
CLIP3Q96DZ5 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4□□□□□ -1.77
CLIP3Q96DZ5 SNORA25.10-201ENST00000515926 124 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 RNU6-143P-201ENST00000516942 93 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 AC006064.5-201ENST00000541782 248 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4□□□□□ -1.77
CLIP3Q96DZ5 AC106785.1-201ENST00000565935 262 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 AC138761.3-201ENST00000579993 334 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 DUSP12P1-201ENST00000612874 516 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 FAM35BP-202ENST00000497389 3337 ntBASIC4□□□□□ -1.77
CLIP3Q96DZ5 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4□□□□□ -1.77
CLIP3Q96DZ5 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CLIP3Q96DZ5 ZNF519P1-201ENST00000449011 1626 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 KPNA2P1-201ENST00000458289 1591 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 ZNF962P-201ENST00000443465 3140 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 MIR372-201ENST00000362225 67 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.176-201ENST00000363815 109 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP130-201ENST00000364431 114 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP283-201ENST00000365604 119 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.476-201ENST00000384347 108 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RNY1P14-201ENST00000384426 108 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.496-201ENST00000384444 101 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RNU1-89P-201ENST00000384592 164 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RPL30P2-201ENST00000414021 291 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AL669831.1-202ENST00000428504 417 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RPL23AP69-201ENST00000431134 458 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC004801.2-202ENST00000463559 283 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC084357.1-201ENST00000473404 255 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RN7SL604P-201ENST00000492589 296 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 UBE2CP3-201ENST00000502715 450 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC097473.1-201ENST00000508142 408 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC092747.3-201ENST00000603769 301 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 MIR6867-201ENST00000610636 67 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AL138726.1-201ENST00000614873 333 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 FAM157A-202ENST00000615155 405 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 MIR6076-201ENST00000617521 113 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 U7.8-201ENST00000619968 63 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AC103858.2-201ENST00000621471 543 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AL357559.1-201ENST00000622228 274 ntBASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CLIP3Q96DZ5 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP388-201ENST00000362584 119 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RNU6-890P-201ENST00000384121 107 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.574-201ENST00000384766 95 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 EIF4E2P1-201ENST00000393781 255 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 MIR1179-201ENST00000408703 91 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 SNORA11-201ENST00000408789 128 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RNU4-6P-201ENST00000410804 122 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AL356095.1-201ENST00000417217 199 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RBMY1KP-201ENST00000423480 476 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RPL7P46-201ENST00000425129 740 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RPL7P2-201ENST00000427639 268 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AL117339.2-201ENST00000430475 180 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 HLA-N-201ENST00000437516 135 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 RPS24P13-201ENST00000442520 397 ntBASIC3.98□□□□□ -1.77
CLIP3Q96DZ5 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms