Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC080078.2-201ENST00000603766 501 ntBASIC2.78□□□□□ -1.96
PDLIM3Q53GG5 AC004805.2-201ENST00000605382 482 ntBASIC2.78□□□□□ -1.96
PDLIM3Q53GG5 AC012409.4-201ENST00000612923 249 ntBASIC2.78□□□□□ -1.96
PDLIM3Q53GG5 AC026585.1-201ENST00000619582 524 ntBASIC2.78□□□□□ -1.96
PDLIM3Q53GG5 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PDLIM3Q53GG5 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PDLIM3Q53GG5 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.78□□□□□ -1.97
PDLIM3Q53GG5 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 MTND5P7-201ENST00000413558 1798 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNU4-12P-201ENST00000365233 139 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNU6-1029P-201ENST00000384109 107 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNU6-1103P-201ENST00000384150 107 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNU6-517P-201ENST00000384362 110 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 UBE2V1P10-201ENST00000414685 269 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RPL7P10-201ENST00000417407 739 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 MTCYBP8-201ENST00000422855 651 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 ZNF863P-201ENST00000426746 417 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 ELOCP14-201ENST00000428070 331 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AL606489.2-201ENST00000433886 234 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 ELOCP7-201ENST00000439968 331 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 ELOCP23-201ENST00000452014 332 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RBMY2UP-201ENST00000453474 324 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNU7-182P-201ENST00000459009 62 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNU7-63P-201ENST00000459054 62 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC139453.3-201ENST00000493276 369 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 SNORA31.3-201ENST00000516029 96 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNA5SP503-201ENST00000517047 117 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RNA5SP165-201ENST00000517142 115 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 ATP5F1P5-201ENST00000526403 760 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AP001893.2-201ENST00000526949 202 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AP003033.1-201ENST00000527244 415 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AL512360.1-201ENST00000555346 234 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 HMGB1P6-201ENST00000569046 646 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC068135.2-201ENST00000569293 1028 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 MIR5680-201ENST00000577577 84 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 MIR4769-201ENST00000584126 77 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 MTND4LP5-201ENST00000605152 292 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 MIR15A-201ENST00000607334 83 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC126118.1-201ENST00000607744 628 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC004852.3-201ENST00000614131 326 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC073534.2-201ENST00000620377 381 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC073308.1-201ENST00000623696 305 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 AC110079.1-202ENST00000635213 138 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 ZNF519P1-201ENST00000449011 1626 ntBASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
PDLIM3Q53GG5 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 RNU6-1085P-201ENST00000363576 107 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 RNU6-1090P-201ENST00000364065 94 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 SNORD115-7-201ENST00000365306 82 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 RNU4-48P-201ENST00000365559 182 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 Y_RNA.505-201ENST00000384489 102 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 MIR454-201ENST00000390180 115 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC126124.2-201ENST00000413542 321 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AL356968.1-201ENST00000416622 474 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 SRIP2-201ENST00000428470 166 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 MTND1P18-201ENST00000448191 573 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC233702.1-201ENST00000482905 502 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 RPL39P36-201ENST00000490784 156 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 APOOP4-201ENST00000513530 597 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 Y_RNA.676-201ENST00000516393 96 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 RANP3-201ENST00000530970 276 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AL359212.1-201ENST00000556608 614 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 MTATP6P3-201ENST00000581686 676 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 MIR4435-1-201ENST00000582552 80 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC008521.1-201ENST00000587471 187 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC008739.2-201ENST00000597006 317 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC019159.1-201ENST00000605094 187 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AL359880.1-201ENST00000621879 266 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.76□□□□□ -1.97
PDLIM3Q53GG5 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PDLIM3Q53GG5 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms