Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.71□□□□□ -1.82
COL4A3Q01955 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.71□□□□□ -1.82
COL4A3Q01955 AC110794.1-201ENST00000505816 425 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 RNU2-69P-201ENST00000516061 100 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 RNU2-27P-201ENST00000516185 142 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 SNORD116.3-201ENST00000517176 78 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 AC087854.1-201ENST00000519706 414 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.71□□□□□ -1.82
COL4A3Q01955 MIR4325-201ENST00000583049 90 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 AL034351.1-201ENST00000605288 668 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 MIR4496-201ENST00000635896 61 ntBASIC3.71□□□□□ -1.82
COL4A3Q01955 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A3Q01955 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC3.7□□□□□ -1.82
COL4A3Q01955 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.7□□□□□ -1.82
COL4A3Q01955 AC091812.1-201ENST00000432235 1948 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A3Q01955 MIR448-201ENST00000362131 111 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 Y_RNA.152-201ENST00000363578 100 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 Y_RNA.153-201ENST00000363615 91 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 RNU6-26P-201ENST00000383985 107 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 RNU6-339P-201ENST00000384310 107 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 Y_RNA.485-201ENST00000384395 102 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.7□□□□□ -1.82
COL4A3Q01955 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.7□□□□□ -1.82
COL4A3Q01955 MRPS18BP2-201ENST00000434310 759 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.7□□□□□ -1.82
COL4A3Q01955 HMGB1P25-201ENST00000468402 607 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 AC087884.1-201ENST00000469738 328 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 AC117503.1-201ENST00000472241 394 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 AC068781.1-201ENST00000488231 618 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A3Q01955 AC026801.1-201ENST00000497178 464 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 PHBP14-201ENST00000512887 367 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 AC026801.2-201ENST00000515352 425 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 RNU6-390P-201ENST00000516259 103 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 GNAI2P1-201ENST00000541815 315 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 AC005476.1-201ENST00000554427 397 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.7□□□□□ -1.82
COL4A3Q01955 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.7□□□□□ -1.82
COL4A3Q01955 MIR4512-201ENST00000583257 77 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL4A3Q01955 AC092447.9-201ENST00000603395 144 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.7□□□□□ -1.82
COL4A3Q01955 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.7□□□□□ -1.82
COL4A3Q01955 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A3Q01955 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A3Q01955 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A3Q01955 AC018555.1-201ENST00000567548 1980 ntBASIC3.7□□□□□ -1.82
COL4A3Q01955 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A3Q01955 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
COL4A3Q01955 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 OR56A5-201ENST00000340110 738 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 SNORD62.1-201ENST00000362541 86 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 Y_RNA.424-201ENST00000384063 103 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 UBA52P6-201ENST00000399822 382 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 RN7SKP53-201ENST00000411337 315 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 AC092447.6-201ENST00000414578 210 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 RPL7P37-201ENST00000425095 738 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A3Q01955 USP9YP30-201ENST00000430729 455 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A3Q01955 GAPDHP27-201ENST00000447427 1020 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 AC093663.1-201ENST00000497190 394 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 HIGD1AP3-201ENST00000515857 278 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 RNU6-307P-201ENST00000516743 106 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 RN7SKP82-201ENST00000516786 223 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 AC022790.1-201ENST00000522872 204 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A3Q01955 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A3Q01955 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 AC139713.2-215ENST00000641428 5037 ntBASIC3.69□□□□□ -1.82
COL4A3Q01955 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
COL4A3Q01955 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A3Q01955 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A3Q01955 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A3Q01955 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A3Q01955 AC007685.1-201ENST00000329806 452 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RNU6-715P-201ENST00000365204 103 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RNU1-115P-201ENST00000365329 160 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RPS4XP7-201ENST00000406274 780 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 USMG5P1-201ENST00000425964 177 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AL162389.1-201ENST00000449233 177 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RBMY2UP-201ENST00000453474 324 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC022493.2-201ENST00000506122 481 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AC096745.1-201ENST00000509945 370 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RNU6-120P-201ENST00000516077 103 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms