Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC083863.1-201ENST00000438811 231 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AC011005.2-201ENST00000487324 359 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AC018437.1-201ENST00000492214 406 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AC078918.1-201ENST00000498515 228 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA4Q00056 AC021146.2-201ENST00000504736 556 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXA4Q00056 Y_RNA.661-201ENST00000516003 99 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 SCARNA16.2-201ENST00000516520 172 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 RNU6-699P-201ENST00000517081 110 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 MIR2116-201ENST00000517221 80 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA4Q00056 AC025755.1-201ENST00000521306 278 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AC091516.1-201ENST00000549191 703 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA4Q00056 AC106785.1-201ENST00000565935 262 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AC053481.4-201ENST00000583164 216 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
HOXA4Q00056 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA4Q00056 AL139395.1-201ENST00000603662 160 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AL160281.1-201ENST00000605307 311 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 AC083806.3-201ENST00000614016 455 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 RMST_4.1-201ENST00000616886 107 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
HOXA4Q00056 PLCE1P1-201ENST00000622094 305 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA4Q00056 AC093010.3-201ENST00000570269 15214 ntBASIC3.28□□□□□ -1.88
HOXA4Q00056 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXA4Q00056 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
HOXA4Q00056 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.89
HOXA4Q00056 PNPT1P2-201ENST00000456768 2050 ntBASIC3.28□□□□□ -1.89
HOXA4Q00056 AC116096.1-201ENST00000566804 2314 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
HOXA4Q00056 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXA4Q00056 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA4Q00056 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA4Q00056 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA4Q00056 RNU6-600P-201ENST00000362524 99 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HOXA4Q00056 RNU6-213P-201ENST00000384051 104 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AL356057.3-201ENST00000402607 340 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 MIR1251-201ENST00000408552 70 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 MIR1290-201ENST00000408735 78 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 RNU6-293P-201ENST00000411259 106 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXA4Q00056 MCFD2P1-201ENST00000417812 300 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AC243428.1-201ENST00000421099 264 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 PGBD4P6-201ENST00000421501 610 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXA4Q00056 MTND3P2-201ENST00000438452 342 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 HMGB1P37-201ENST00000439613 609 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA4Q00056 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXA4Q00056 AL451050.1-201ENST00000450126 415 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXA4Q00056 RAC1P2-201ENST00000511164 579 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXA4Q00056 AC009902.1-201ENST00000519351 183 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AC007991.1-201ENST00000522680 631 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 ATP5F1P5-201ENST00000526403 760 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA4Q00056 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA4Q00056 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA4Q00056 HMGB1P14-201ENST00000557424 591 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 BNIP3P16-201ENST00000589779 534 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AL121655.1-201ENST00000605811 308 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AL158196.1-201ENST00000616786 434 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AC091925.1-201ENST00000623204 462 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 AC138627.2-201ENST00000624202 601 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXA4Q00056 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA4Q00056 MAPK10-373ENST00000641983 6772 ntBASIC3.27□□□□□ -1.89
HOXA4Q00056 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXA4Q00056 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXA4Q00056 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXA4Q00056 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXA4Q00056 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-37P-201ENST00000362692 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-11P-201ENST00000364234 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 Y_RNA.252-201ENST00000364556 101 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-7-201ENST00000364784 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-8-201ENST00000365467 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-25P-201ENST00000383873 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-1-201ENST00000383898 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-48P-201ENST00000384161 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-36P-201ENST00000384172 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-4P-201ENST00000384205 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-5P-201ENST00000384238 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-3P-201ENST00000384314 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-16P-201ENST00000384385 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 Y_RNA.496-201ENST00000384444 101 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-15P-201ENST00000384534 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-2-201ENST00000384627 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-29P-201ENST00000384637 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-9-201ENST00000384776 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU6-33P-201ENST00000384793 107 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNU2-33P-201ENST00000410344 192 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RN7SKP177-201ENST00000410567 355 ntBASIC3.26□□□□□ -1.89
HOXA4Q00056 RNA5SP39-201ENST00000411245 120 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms