Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
LIG1P18858 RNU6-600P-201ENST00000362524 99 ntBASIC4.81□□□□□ -1.64
LIG1P18858 Y_RNA.214-201ENST00000364201 112 ntBASIC4.81□□□□□ -1.64
LIG1P18858 Y_RNA.222-201ENST00000364264 102 ntBASIC4.81□□□□□ -1.64
LIG1P18858 SNORA7.2-201ENST00000364446 145 ntBASIC4.81□□□□□ -1.64
LIG1P18858 SNORD6-201ENST00000365444 73 ntBASIC4.81□□□□□ -1.64
LIG1P18858 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
LIG1P18858 RNU6-209P-201ENST00000384118 107 ntBASIC4.81□□□□□ -1.64
LIG1P18858 Y_RNA.551-201ENST00000384661 102 ntBASIC4.81□□□□□ -1.64
LIG1P18858 MT-TW-201ENST00000387382 68 ntBASIC4.81□□□□□ -1.64
LIG1P18858 HSPE1P26-201ENST00000405341 275 ntBASIC4.81□□□□□ -1.64
LIG1P18858 MIR1302-6-201ENST00000408466 90 ntBASIC4.81□□□□□ -1.64
LIG1P18858 RPL7AP73-201ENST00000413490 353 ntBASIC4.81□□□□□ -1.64
LIG1P18858 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.81□□□□□ -1.64
LIG1P18858 UBE2D3P2-201ENST00000424409 445 ntBASIC4.81□□□□□ -1.64
LIG1P18858 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG1P18858 PRDX3P3-201ENST00000447765 522 ntBASIC4.81□□□□□ -1.64
LIG1P18858 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.81□□□□□ -1.64
LIG1P18858 RPS23P7-201ENST00000466210 444 ntBASIC4.81□□□□□ -1.64
LIG1P18858 RN7SL303P-201ENST00000469773 251 ntBASIC4.81□□□□□ -1.64
LIG1P18858 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC4.81□□□□□ -1.64
LIG1P18858 MTND3P25-201ENST00000509243 135 ntBASIC4.81□□□□□ -1.64
LIG1P18858 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.81□□□□□ -1.64
LIG1P18858 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.81□□□□□ -1.64
LIG1P18858 RNU6-914P-201ENST00000516749 109 ntBASIC4.81□□□□□ -1.64
LIG1P18858 IGKV2D-23-201ENST00000518179 286 ntBASIC4.81□□□□□ -1.64
LIG1P18858 AC104576.1-201ENST00000524225 88 ntBASIC4.81□□□□□ -1.64
LIG1P18858 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.81□□□□□ -1.64
LIG1P18858 TVP23BP1-201ENST00000557500 617 ntBASIC4.81□□□□□ -1.64
LIG1P18858 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.81□□□□□ -1.64
LIG1P18858 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG1P18858 MTND4LP5-201ENST00000605152 292 ntBASIC4.81□□□□□ -1.64
LIG1P18858 uc_338.13-201ENST00000618243 179 ntBASIC4.81□□□□□ -1.64
LIG1P18858 MAPK10-372ENST00000641954 3413 ntBASIC4.81□□□□□ -1.64
LIG1P18858 AL133383.2-201ENST00000622958 2336 ntBASIC4.81□□□□□ -1.64
LIG1P18858 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
LIG1P18858 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIG1P18858 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
LIG1P18858 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIG1P18858 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIG1P18858 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIG1P18858 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG1P18858 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG1P18858 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
LIG1P18858 RNU6-1249P-201ENST00000363237 111 ntBASIC4.8□□□□□ -1.64
LIG1P18858 Y_RNA.534-201ENST00000384599 112 ntBASIC4.8□□□□□ -1.64
LIG1P18858 RNU4-61P-201ENST00000411243 107 ntBASIC4.8□□□□□ -1.64
LIG1P18858 RNU6-607P-201ENST00000411283 108 ntBASIC4.8□□□□□ -1.64
LIG1P18858 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.8□□□□□ -1.64
LIG1P18858 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG1P18858 HMGB1P27-201ENST00000431429 603 ntBASIC4.8□□□□□ -1.64
LIG1P18858 RNU6-1023P-201ENST00000516137 106 ntBASIC4.8□□□□□ -1.64
LIG1P18858 SNORA31.9-201ENST00000516429 84 ntBASIC4.8□□□□□ -1.64
LIG1P18858 SNORA31.22-201ENST00000517204 135 ntBASIC4.8□□□□□ -1.64
LIG1P18858 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.8□□□□□ -1.64
LIG1P18858 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.8□□□□□ -1.64
LIG1P18858 AP000889.1-201ENST00000530968 660 ntBASIC4.8□□□□□ -1.64
LIG1P18858 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.8□□□□□ -1.64
LIG1P18858 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG1P18858 RPL23AP87-202ENST00000573039 466 ntBASIC4.8□□□□□ -1.64
LIG1P18858 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC4.8□□□□□ -1.64
LIG1P18858 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG1P18858 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIG1P18858 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG1P18858 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG1P18858 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
LIG1P18858 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIG1P18858 AC018555.1-201ENST00000567548 1980 ntBASIC4.79□□□□□ -1.64
LIG1P18858 RNU6-76P-201ENST00000384060 104 ntBASIC4.79□□□□□ -1.64
LIG1P18858 MIR578-201ENST00000384828 96 ntBASIC4.79□□□□□ -1.64
LIG1P18858 SNORD73A-201ENST00000386062 65 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AL445529.1-201ENST00000398713 389 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AL138878.1-201ENST00000405131 347 ntBASIC4.79□□□□□ -1.64
LIG1P18858 HSPE1P8-201ENST00000406997 288 ntBASIC4.79□□□□□ -1.64
LIG1P18858 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.79□□□□□ -1.64
LIG1P18858 AL157831.1-201ENST00000426134 473 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.79□□□□□ -1.64
LIG1P18858 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.79□□□□□ -1.64
LIG1P18858 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.79□□□□□ -1.64
LIG1P18858 FCF1P4-201ENST00000448326 183 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.79□□□□□ -1.64
LIG1P18858 MTCO3P8-201ENST00000453691 755 ntBASIC4.79□□□□□ -1.64
LIG1P18858 RPL23AP62-201ENST00000463396 453 ntBASIC4.79□□□□□ -1.64
LIG1P18858 RN7SL385P-201ENST00000468873 276 ntBASIC4.79□□□□□ -1.64
LIG1P18858 SNRPGP3-201ENST00000469405 227 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.79□□□□□ -1.64
LIG1P18858 SNORA25.11-201ENST00000515935 105 ntBASIC4.79□□□□□ -1.64
LIG1P18858 RNU7-4P-201ENST00000516961 62 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.79□□□□□ -1.64
LIG1P18858 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.79□□□□□ -1.64
LIG1P18858 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.79□□□□□ -1.64
LIG1P18858 SNRPGP16-201ENST00000533275 226 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AC107016.1-201ENST00000550463 337 ntBASIC4.79□□□□□ -1.64
LIG1P18858 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.79□□□□□ -1.64
LIG1P18858 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.79□□□□□ -1.64
LIG1P18858 MIR4697-201ENST00000582977 78 ntBASIC4.79□□□□□ -1.64
LIG1P18858 MIR3138-201ENST00000585238 82 ntBASIC4.79□□□□□ -1.64
LIG1P18858 OR1M4P-201ENST00000589199 287 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AC112200.1-201ENST00000625015 234 ntBASIC4.79□□□□□ -1.64
LIG1P18858 AC140479.6-201ENST00000633535 357 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms