Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FRG1HP-204ENST00000617940 757 ntBASIC0.5□□□□□ -2.33
COL6A3P12111 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
COL6A3P12111 Y_RNA.498-201ENST00000384460 102 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AL356432.1-201ENST00000405809 419 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
COL6A3P12111 RNU6-711P-201ENST00000517255 106 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
COL6A3P12111 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC0.49□□□□□ -2.33
COL6A3P12111 AL357075.2-201ENST00000614906 189 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
COL6A3P12111 Y_RNA.190-201ENST00000363964 101 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
COL6A3P12111 SNORD54-201ENST00000459159 67 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AC112206.3-201ENST00000514578 389 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC0.49□□□□□ -2.33
COL6A3P12111 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
COL6A3P12111 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.49□□□□□ -2.33
COL6A3P12111 HSBP1P2-201ENST00000299671 229 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 RNU1-58P-201ENST00000362413 163 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 SNORA16B-201ENST00000364674 135 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AC093155.1-201ENST00000440164 826 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 OR6C72P-201ENST00000451403 892 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC0.49□□□□□ -2.33
COL6A3P12111 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC0.49□□□□□ -2.33
COL6A3P12111 AC021146.9-201ENST00000512503 156 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.49□□□□□ -2.33
COL6A3P12111 IGKV1-22-201ENST00000524313 326 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC0.49□□□□□ -2.33
COL6A3P12111 AC026371.1-201ENST00000551867 419 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.49□□□□□ -2.33
COL6A3P12111 LINC00933-203ENST00000559812 219 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 BNIP3P25-201ENST00000596023 559 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AC107214.2-201ENST00000608204 634 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 AL589935.2-201ENST00000616471 1231 ntBASIC0.49□□□□□ -2.33
COL6A3P12111 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.48□□□□□ -2.33
COL6A3P12111 Y_RNA.53-201ENST00000362765 102 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 OFD1P18Y-201ENST00000420889 959 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC0.48□□□□□ -2.33
COL6A3P12111 RABEPKP1-201ENST00000440529 1026 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.48□□□□□ -2.33
COL6A3P12111 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC0.48□□□□□ -2.33
COL6A3P12111 uc_338.9-201ENST00000617424 182 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 AL136313.1-201ENST00000624804 202 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
COL6A3P12111 ELOCP6-201ENST00000429066 328 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 NAP1L4P3-201ENST00000432820 1147 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC0.48□□□□□ -2.33
COL6A3P12111 ELOCP12-201ENST00000458706 328 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.48□□□□□ -2.33
COL6A3P12111 ELOCP32-201ENST00000548625 324 ntBASIC0.48□□□□□ -2.33
COL6A3P12111 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC0.48□□□□□ -2.33
COL6A3P12111 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
COL6A3P12111 RN7SKP61-201ENST00000410642 295 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AL161449.1-201ENST00000414531 1199 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 MTND4LP13-201ENST00000425022 298 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.47□□□□□ -2.33
COL6A3P12111 RNU7-157P-201ENST00000459600 66 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AC010627.1-201ENST00000503819 1294 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AL160236.1-201ENST00000556317 195 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 SNORD3E-201ENST00000362899 217 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.47□□□□□ -2.33
COL6A3P12111 MIR587-201ENST00000384845 96 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC0.47□□□□□ -2.33
COL6A3P12111 RPL23AP3-201ENST00000453844 468 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AC025768.1-201ENST00000510057 267 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.47□□□□□ -2.33
COL6A3P12111 NBEAP1-201ENST00000554452 979 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 SNORD84-203ENST00000584275 78 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AC245128.3-201ENST00000594721 748 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC0.47□□□□□ -2.33
COL6A3P12111 SNORA7.2-201ENST00000364446 145 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 SNORA51.2-201ENST00000364595 132 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 RNU6-40P-201ENST00000384254 107 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 XKRYP1-201ENST00000423438 492 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 USP9YP18-201ENST00000425912 695 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 XKRYP2-201ENST00000432915 492 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
COL6A3P12111 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
COL6A3P12111 RNU1-61P-201ENST00000516107 151 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC0.47□□□□□ -2.33
COL6A3P12111 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC0.47□□□□□ -2.33
COL6A3P12111 MTND2P13-201ENST00000577438 1039 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 MIR4287-201ENST00000579398 78 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 AL162730.1-201ENST00000605734 292 ntBASIC0.47□□□□□ -2.33
COL6A3P12111 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.46□□□□□ -2.34
COL6A3P12111 RNU6-225P-201ENST00000384613 103 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 MIR627-201ENST00000384979 97 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.46□□□□□ -2.34
COL6A3P12111 RPL31P60-201ENST00000478450 367 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 AC090115.3-201ENST00000553218 849 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
COL6A3P12111 TRGV6-201ENST00000417928 299 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 AL645638.1-201ENST00000440519 361 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.46□□□□□ -2.34
COL6A3P12111 RNU6-1037P-201ENST00000459571 107 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC0.46□□□□□ -2.34
COL6A3P12111 BNIP3P16-201ENST00000589779 534 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 FAM157B-203ENST00000639350 358 ntBASIC0.46□□□□□ -2.34
COL6A3P12111 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC0.46□□□□□ -2.34
COL6A3P12111 RNU6-1216P-201ENST00000362590 107 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms