Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.29□□□□□ -1.72
COL6A1P12109 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.29□□□□□ -1.72
COL6A1P12109 AL121576.1-201ENST00000556055 276 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.29□□□□□ -1.72
COL6A1P12109 AC022968.1-201ENST00000567372 442 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 MIR4680-201ENST00000580906 66 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 MIR4503-201ENST00000582187 83 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AC009570.1-201ENST00000609599 745 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 DUSP12P1-201ENST00000612874 516 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 TUG1_2.1-201ENST00000614234 87 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AL355365.1-201ENST00000616480 294 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 XIST_intron.1-201ENST00000619444 68 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 AC110801.1-201ENST00000623590 212 ntBASIC4.29□□□□□ -1.72
COL6A1P12109 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A1P12109 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 KPNA2P1-201ENST00000458289 1591 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A1P12109 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 RNU6-1115P-201ENST00000362490 106 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 RNU6-128P-201ENST00000383976 107 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 SNORA75B-201ENST00000384053 137 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 MIR1302-3-201ENST00000408128 138 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 Y_RNA.646-201ENST00000410980 101 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 RN7SKP53-201ENST00000411337 315 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 MCFD2P1-201ENST00000417812 300 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 AL159169.1-201ENST00000421119 127 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A1P12109 MTCO3P45-201ENST00000443036 613 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 RPS3AP46-201ENST00000448352 682 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A1P12109 AL162389.1-201ENST00000449233 177 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 SSXP4-201ENST00000451349 245 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 DYNLL1P5-201ENST00000467158 270 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 RPL7P47-201ENST00000497299 556 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.28□□□□□ -1.72
COL6A1P12109 AC026801.2-201ENST00000515352 425 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 MTCO2P24-201ENST00000515611 426 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 SNORA25.10-201ENST00000515926 124 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 COX6CP5-201ENST00000527162 228 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.28□□□□□ -1.72
COL6A1P12109 ATP1B3P1-201ENST00000605365 821 ntBASIC4.28□□□□□ -1.72
COL6A1P12109 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.28□□□□□ -1.72
COL6A1P12109 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A1P12109 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
COL6A1P12109 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.28□□□□□ -1.72
COL6A1P12109 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A1P12109 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A1P12109 Y_RNA.149-201ENST00000363558 117 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A1P12109 SMIM11P1-201ENST00000369586 178 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 Y_RNA.399-201ENST00000383955 105 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 RNU6-1032P-201ENST00000384100 107 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 MIR199A2-201ENST00000385289 110 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 SNORD70.1-201ENST00000391007 85 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 MRPL42P3-201ENST00000401492 326 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 SNORA3C-201ENST00000408792 125 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
COL6A1P12109 RNA5SP111-201ENST00000411386 101 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 CYCSP4-201ENST00000429682 331 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 RPL23AP69-201ENST00000431134 458 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC104058.1-201ENST00000448028 297 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.27□□□□□ -1.73
COL6A1P12109 U3.44-201ENST00000458938 192 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AP001486.1-201ENST00000463339 476 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC008155.2-201ENST00000464337 397 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 RN7SL585P-201ENST00000470538 280 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC006517.1-201ENST00000480485 328 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.27□□□□□ -1.73
COL6A1P12109 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL6A1P12109 AC097473.1-201ENST00000508142 408 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.27□□□□□ -1.73
COL6A1P12109 RNU6-1137P-201ENST00000517073 99 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.27□□□□□ -1.73
COL6A1P12109 IGLV3-26-201ENST00000520756 302 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC090115.3-201ENST00000553218 849 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC010653.1-201ENST00000571108 881 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.27□□□□□ -1.73
COL6A1P12109 AC110741.2-201ENST00000605278 268 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AP002826.1-201ENST00000608835 315 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 MIR6128-201ENST00000615528 109 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 PLCE1P1-201ENST00000622094 305 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC007998.5-201ENST00000622938 237 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.27□□□□□ -1.73
COL6A1P12109 AC119674.1-207ENST00000641355 633 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 AC091152.2-201ENST00000591628 2569 ntBASIC4.27□□□□□ -1.73
COL6A1P12109 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms