Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC009901.1-201ENST00000506703 541 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AC098591.2-201ENST00000510152 315 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AC105417.1-201ENST00000514691 285 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 MIR2276-201ENST00000516886 89 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AC009902.1-201ENST00000519351 183 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 PSMA2P1-201ENST00000526365 646 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AP002404.1-201ENST00000532005 451 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 OR5BN1P-201ENST00000532955 829 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXC11O43248 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXC11O43248 MIR5692A1-201ENST00000580523 69 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AL035413.2-201ENST00000604801 525 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AC007938.3-201ENST00000604965 623 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 MIR6863-201ENST00000636112 90 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AC068137.4-201ENST00000638485 296 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC11O43248 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC11O43248 MIR148B-201ENST00000362252 99 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 Y_RNA.111-201ENST00000363248 100 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 RNU1-140P-201ENST00000365040 165 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 MIR1289-1-201ENST00000408836 144 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 RNA5SP31-201ENST00000411144 127 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 NDUFB4P5-201ENST00000415445 361 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXC11O43248 AL358075.3-201ENST00000426289 226 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 MTCO2P19-201ENST00000427513 598 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AC104332.2-201ENST00000429959 156 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC11O43248 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC11O43248 OR2B8P-201ENST00000432841 938 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AL596276.1-201ENST00000434465 418 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC11O43248 MTND1P1-201ENST00000445453 368 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXC11O43248 RNU7-63P-201ENST00000459054 62 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXC11O43248 RPS3AP14-201ENST00000483907 780 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC11O43248 AC091435.1-201ENST00000505442 584 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXC11O43248 Y_RNA.655-201ENST00000515919 96 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 RNU6-1183P-201ENST00000517054 60 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC11O43248 AP000889.1-201ENST00000530968 660 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXC11O43248 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC11O43248 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC11O43248 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXC11O43248 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXC11O43248 AC008739.2-201ENST00000597006 317 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 AL391646.1-201ENST00000603860 190 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 uc_338.25-201ENST00000613756 156 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXC11O43248 MIR622-201ENST00000638396 96 ntBASIC3.26□□□□□ -1.89
HOXC11O43248 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXC11O43248 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
HOXC11O43248 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HOXC11O43248 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HOXC11O43248 ASNSP3-201ENST00000451989 1306 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC11O43248 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC11O43248 SNORD116-4-201ENST00000384733 96 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 SNORA40C-201ENST00000391285 128 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 RNU4-46P-201ENST00000410818 138 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXC11O43248 AC009414.1-201ENST00000427200 443 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AL589823.1-201ENST00000429577 183 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 CST9LP2-201ENST00000437612 320 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 RPL23AP20-201ENST00000447965 421 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 Z99127.3-201ENST00000448158 395 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AC027673.1-201ENST00000456245 405 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AL356010.1-201ENST00000456364 102 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 RPL9P6-201ENST00000492764 598 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AC117522.3-201ENST00000507974 584 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC11O43248 AP003034.1-201ENST00000534621 422 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 EIF4BP1-201ENST00000554881 351 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AC021739.1-201ENST00000559631 174 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXC11O43248 UBL5P2-201ENST00000583788 219 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC11O43248 AL451007.1-201ENST00000595491 289 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.25□□□□□ -1.89
HOXC11O43248 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC11O43248 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXC11O43248 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXC11O43248 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXC11O43248 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXC11O43248 MIR412-201ENST00000362142 91 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC11O43248 DYNLT3P1-201ENST00000378574 347 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 RNU6-550P-201ENST00000391057 101 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 RPS4XP8-201ENST00000402039 771 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC023141.4-201ENST00000412031 328 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXC11O43248 AC096649.2-201ENST00000416186 393 ntBASIC3.24□□□□□ -1.89
HOXC11O43248 MTCO3P30-201ENST00000426425 670 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms