Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC128713.1-201ENST00000471495 306 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RPL23AP11-201ENST00000475260 469 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RAP1BP2-201ENST00000478270 544 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC022447.1-201ENST00000515358 464 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 MIR3616-201ENST00000584070 92 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC005771.1-201ENST00000585581 349 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC023043.3-201ENST00000593113 385 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC104763.2-201ENST00000604179 382 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC013562.2-201ENST00000611632 603 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC091304.9-201ENST00000612091 226 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AL365204.3-201ENST00000612448 685 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AL158063.1-201ENST00000615349 536 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 MIR6852-201ENST00000621699 66 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 Z69908.1-201ENST00000622603 247 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 HSPE1P11-201ENST00000339579 310 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 VTRNA1-1-201ENST00000363120 99 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 U8.3-201ENST00000363321 132 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 Y_RNA.201-201ENST00000364052 96 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 RNU6-960P-201ENST00000364056 120 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 RNY1P12-201ENST00000364251 105 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 SNORA20.2-201ENST00000383922 131 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AL360182.1-201ENST00000397433 468 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 FO393413.1-201ENST00000402892 195 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AL592045.1-201ENST00000429867 352 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 MRPL50P4-201ENST00000446432 475 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AC093899.1-201ENST00000457984 376 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 MRPS36P2-201ENST00000512569 299 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 Y_RNA.688-201ENST00000516565 95 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 RNU6-826P-201ENST00000516827 104 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 RNU6-1220P-201ENST00000517126 108 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AP000889.1-201ENST00000530968 660 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 HSPE1P20-201ENST00000538133 289 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 MIR4319-201ENST00000577285 85 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 RPL23AP88-201ENST00000605759 454 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 AC010329.5-201ENST00000623497 2174 ntBASIC2.54□□□□□ -2
ATG4BQ9Y4P1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
ATG4BQ9Y4P1 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 SNORD56.5-201ENST00000364281 72 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 RNU6-946P-201ENST00000383878 107 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 RNU6-297P-201ENST00000384636 107 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 MIR9-1-201ENST00000385198 89 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AL356057.3-201ENST00000402607 340 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 RPS12P24-201ENST00000412619 387 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC098826.1-201ENST00000433943 471 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 RPS15AP7-201ENST00000439294 405 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 UBBP3-201ENST00000445497 241 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC009961.3-201ENST00000449832 765 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 FABP5P13-201ENST00000452144 328 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 RN7SL297P-201ENST00000483161 293 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 SNORA18.6-201ENST00000516792 115 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 RNU6-143P-201ENST00000516942 93 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.53□□□□□ -2
ATG4BQ9Y4P1 MIR3682-201ENST00000581338 84 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC010620.1-201ENST00000601088 1102 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AL451064.1-201ENST00000607718 471 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AL161734.1-201ENST00000609720 557 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AC130324.3-201ENST00000614165 542 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 AP001506.1-201ENST00000615444 211 ntBASIC2.53□□□□□ -2
ATG4BQ9Y4P1 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 137 ms