Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-1208P-201ENST00000459588 107 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AL049830.2-201ENST00000480072 201 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 RNA5SP164-201ENST00000516533 110 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 MTCO3P23-201ENST00000561363 289 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AC060780.3-201ENST00000589464 80 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 AP003122.6-201ENST00000623831 495 ntBASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
CCDC9Q9Y3X0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 SNORD14B-201ENST00000364533 90 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 RNU6-332P-201ENST00000391193 108 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 AC009161.1-201ENST00000417306 376 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 AL139413.1-201ENST00000421309 217 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 BPY2DP-201ENST00000422208 265 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 WASF1P1-201ENST00000447560 1131 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 MTCYBP18-201ENST00000501056 747 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 RN7SKP83-201ENST00000516512 178 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 AL118558.2-201ENST00000556294 238 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 VN1R80P-201ENST00000597126 338 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 RMST_4.1-201ENST00000616886 107 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 ADAM3A-203ENST00000461344 2157 ntBASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC9Q9Y3X0 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 AL592148.1-201ENST00000413568 445 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 AC005300.1-201ENST00000428401 373 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 BTF3P15-201ENST00000455606 336 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 HMGN2P26-201ENST00000463169 339 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 RPL21P93-201ENST00000480465 489 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 AC139783.2-201ENST00000504847 1145 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 AF235103.2-201ENST00000525753 346 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 LINC00933-203ENST00000559812 219 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 ATP1B3P1-201ENST00000605365 821 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 AC064801.1-201ENST00000612025 407 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC9Q9Y3X0 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 RNU1-33P-201ENST00000364249 162 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 RNU6-1303P-201ENST00000364841 107 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 RPLP0P7-201ENST00000416050 667 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 RPS15AP5-201ENST00000436276 388 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 HMGB1P31-201ENST00000437242 427 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC098831.1-201ENST00000440661 216 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC104472.2-201ENST00000469035 601 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC011005.2-201ENST00000487324 359 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 RNU1-86P-201ENST00000516108 154 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 RNU1-107P-201ENST00000516617 154 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 CYCSP39-201ENST00000565821 309 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC012493.2-201ENST00000595083 291 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 NUTF2P8-201ENST00000604593 363 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AL137849.1-201ENST00000604767 169 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 RNU1-30P-201ENST00000606575 163 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC128687.2-201ENST00000609657 566 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 MIR3199-2-201ENST00000636243 86 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC100810.6-201ENST00000638068 285 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC093536.2-201ENST00000565257 1406 ntBASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC9Q9Y3X0 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 RNU1-105P-201ENST00000363470 161 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-1283P-201ENST00000365314 105 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 MIR1289-1-201ENST00000408836 144 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 Y_RNA.615-201ENST00000410769 117 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 MTCO3P18-201ENST00000440206 761 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms