Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU2-33P-201ENST00000410344 192 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 BTF3L4P3-201ENST00000418879 476 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AL451062.2-201ENST00000427515 271 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 RPL21P23-201ENST00000446654 460 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 RNU7-170P-201ENST00000459303 61 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AC012181.1-201ENST00000479895 423 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 TRBVA-201ENST00000498804 316 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 MTCO3P9-201ENST00000506989 781 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 HIGD1AP13-201ENST00000509878 289 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-189P-201ENST00000516120 101 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AL118558.2-201ENST00000556294 238 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AC005668.1-201ENST00000571142 476 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 MIR5047-201ENST00000579212 100 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 MIR5583-1-201ENST00000580941 59 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AL161798.1-201ENST00000604630 131 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AC009233.1-201ENST00000616477 371 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AC103705.1-201ENST00000619013 241 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AP001148.1-201ENST00000624124 2359 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AL672296.1-201ENST00000427780 2158 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AC090740.1-201ENST00000623193 2262 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AF127577.6-201ENST00000623352 2191 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 HSPA8P4-201ENST00000511877 1920 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 Y_RNA.61-201ENST00000362835 102 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 SNORD56.3-201ENST00000363507 71 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-715P-201ENST00000365204 103 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 DEFB109C-201ENST00000382575 264 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 DEFB109B-201ENST00000382656 264 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-1013P-201ENST00000384180 107 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 PDCL2P1-201ENST00000419302 352 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AC245291.1-201ENST00000419501 328 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AC007389.2-201ENST00000434630 306 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 TAAR7P-201ENST00000436141 242 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 HSPD1P21-201ENST00000436541 245 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 HMGB1P12-201ENST00000438594 598 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RNU7-167P-201ENST00000459160 62 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-329P-201ENST00000459618 107 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 FGF7P4-201ENST00000509595 295 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RNU4-49P-201ENST00000516080 140 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-1038P-201ENST00000516516 104 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RNU7-30P-201ENST00000516835 62 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AC106785.1-201ENST00000565935 262 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AC092747.3-201ENST00000603769 301 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 uc_338.1-201ENST00000612113 180 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AL359314.1-201ENST00000616913 261 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 AP003400.5-201ENST00000624827 617 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 MTND1P37-201ENST00000636562 264 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
LIMCH1Q9UPQ0 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RNA5SP383-201ENST00000362934 120 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 SNORD113-7-201ENST00000363762 77 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-805P-201ENST00000365643 106 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AL139039.1-201ENST00000401900 692 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6ATAC-201ENST00000408749 126 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-1148P-201ENST00000410992 104 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 BX323014.1-201ENST00000412876 237 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RPS15AP6-201ENST00000420703 385 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 HSPE1P1-201ENST00000421494 318 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 ARF4P2-201ENST00000430209 526 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 NDUFA5P4-201ENST00000436704 385 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RPL21P41-201ENST00000459863 264 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 TTC39CP1-201ENST00000512513 755 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RNA5SP471-201ENST00000516971 106 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 RN7SKP289-201ENST00000517244 295 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 SCARNA20.6-201ENST00000517251 106 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 IGKV2-23-201ENST00000518729 323 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AC022418.1-201ENST00000624118 445 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 AL512643.1-201ENST00000635735 524 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 U6.98-201ENST00000637157 84 ntBASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
LIMCH1Q9UPQ0 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 158.3 ms