Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC013553.2-201ENST00000604244 589 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC005332.6-201ENST00000613178 446 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC253576.2-201ENST00000618815 580 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AL596245.1-201ENST00000618994 362 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC091304.6-201ENST00000619761 202 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AL157770.1-201ENST00000623049 439 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.19□□□□□ -2.22
SCN3AQ9NY46 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.19□□□□□ -2.22
SCN3AQ9NY46 MIR16-2-201ENST00000362117 81 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 Y_RNA.40-201ENST00000362645 93 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 U8.3-201ENST00000363321 132 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 MIR217-201ENST00000384817 110 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AL033519.2-201ENST00000403958 392 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 RNU6-955P-201ENST00000410497 104 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 NDUFB4P7-201ENST00000423198 363 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 NDUFA5P4-201ENST00000436704 385 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.19□□□□□ -2.22
SCN3AQ9NY46 MTND2P30-201ENST00000456663 382 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 PNPLA4P1-201ENST00000458328 305 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 RPS29P23-201ENST00000458635 123 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AC010460.2-201ENST00000509054 677 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC1.19□□□□□ -2.22
SCN3AQ9NY46 OR5AL2P-201ENST00000532185 920 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AC093510.2-201ENST00000562820 896 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 MIR4452-201ENST00000583004 71 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AC090330.1-201ENST00000588646 764 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AL627230.6-201ENST00000611129 280 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AL589743.7-201ENST00000612637 233 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AC024257.5-201ENST00000612739 531 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AC002550.2-201ENST00000621246 394 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 AL356473.1-201ENST00000406203 1408 ntBASIC1.19□□□□□ -2.22
SCN3AQ9NY46 RNU1-62P-201ENST00000362599 164 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 RNU1-148P-201ENST00000384472 162 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 Y_RNA.508-201ENST00000384502 114 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 MIR95-201ENST00000385072 81 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 RPS20P15-201ENST00000412792 311 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 NDUFS5P4-201ENST00000412983 318 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 MTND1P21-201ENST00000412991 285 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 MTCO3P46-201ENST00000425787 232 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 MTND4P6-201ENST00000438297 472 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC117503.1-201ENST00000472241 394 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC068781.1-201ENST00000488231 618 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC055855.1-201ENST00000489563 579 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 RNA5SP290-201ENST00000517133 127 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC090502.2-201ENST00000549267 280 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL354943.1-201ENST00000572103 781 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL713866.2-201ENST00000603579 219 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL357094.1-201ENST00000603845 844 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL121652.1-201ENST00000608851 448 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL118556.2-201ENST00000614375 824 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 ZNF702P-202ENST00000434269 1966 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AP000275.1-201ENST00000411943 390 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC092427.1-201ENST00000439177 601 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL592447.1-201ENST00000447592 540 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC005410.1-202ENST00000460347 485 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC087343.1-201ENST00000477341 475 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 SNORA31.6-201ENST00000516241 130 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 RNU6-751P-201ENST00000516382 101 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 MTCYBP23-201ENST00000558717 1102 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC068338.1-201ENST00000565567 176 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 RN7SL622P-201ENST00000585292 275 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.18□□□□□ -2.22
SCN3AQ9NY46 MIR6504-201ENST00000613520 61 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC104763.3-201ENST00000613765 618 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC109809.1-201ENST00000619665 545 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC079416.3-201ENST00000624479 549 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 AC132825.7-201ENST00000638744 335 ntBASIC1.18□□□□□ -2.22
SCN3AQ9NY46 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 RNU4-42P-201ENST00000364738 142 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 RNU6-754P-201ENST00000391166 107 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 RNU2-33P-201ENST00000410344 192 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 RPL7P34-201ENST00000433316 712 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AL357134.1-201ENST00000445848 426 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 XACT-201ENST00000468762 497 ntTSL 5 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AL121769.1-201ENST00000469473 401 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 RN7SKP258-201ENST00000517151 304 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AL391813.1-201ENST00000603098 260 ntBASIC1.17□□□□□ -2.22
SCN3AQ9NY46 AC008121.1-201ENST00000603244 268 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms