Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.57□□□□□ -2
DDX28Q9NUL7 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.57□□□□□ -2
DDX28Q9NUL7 AL049779.4-201ENST00000604500 156 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 AC022893.3-201ENST00000607665 437 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.57□□□□□ -2
DDX28Q9NUL7 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
DDX28Q9NUL7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.57□□□□□ -2
DDX28Q9NUL7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.57□□□□□ -2
DDX28Q9NUL7 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
DDX28Q9NUL7 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
DDX28Q9NUL7 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.56□□□□□ -2
DDX28Q9NUL7 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.56□□□□□ -2
DDX28Q9NUL7 U8.3-201ENST00000363321 132 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 SNORA25.6-201ENST00000364121 118 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 RNY1P12-201ENST00000364251 105 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 RNY3P10-201ENST00000384764 102 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 MIR301A-201ENST00000385261 86 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 RPS3AP36-201ENST00000398190 775 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AL512633.1-201ENST00000399931 655 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 RNU2-49P-201ENST00000410666 184 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC096649.2-201ENST00000416186 393 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AL353729.1-201ENST00000425044 720 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 MTATP6P17-201ENST00000431030 672 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AL591704.1-201ENST00000432574 275 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AL591212.2-201ENST00000433923 257 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 MTND1P26-201ENST00000440488 538 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.56□□□□□ -2
DDX28Q9NUL7 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.56□□□□□ -2
DDX28Q9NUL7 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.56□□□□□ -2
DDX28Q9NUL7 SNRPGP9-201ENST00000456025 225 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 RPS15AP34-201ENST00000487776 387 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC139453.3-201ENST00000493276 369 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AC105252.1-201ENST00000503089 286 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 MRPS36P2-201ENST00000512569 299 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC060788.1-201ENST00000521318 469 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 GLYCAM1-201ENST00000546596 285 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.56□□□□□ -2
DDX28Q9NUL7 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC015871.2-201ENST00000603605 948 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 Z94722.1-201ENST00000604328 474 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AC011939.3-201ENST00000613686 466 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 AC008250.2-201ENST00000615261 205 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 MIR3199-2-201ENST00000636243 86 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.56□□□□□ -2
DDX28Q9NUL7 AC096644.4-201ENST00000563417 2912 ntBASIC2.56□□□□□ -2
DDX28Q9NUL7 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.56□□□□□ -2
DDX28Q9NUL7 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.56□□□□□ -2
DDX28Q9NUL7 FGF7P2-201ENST00000332473 296 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 RNU1-35P-201ENST00000362782 153 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 Y_RNA.534-201ENST00000384599 112 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 SNORA40.3-201ENST00000390964 122 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.55□□□□□ -2
DDX28Q9NUL7 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.55□□□□□ -2
DDX28Q9NUL7 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.55□□□□□ -2
DDX28Q9NUL7 RPS24P1-201ENST00000438550 371 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 RPS15AP7-201ENST00000439294 405 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC107083.1-201ENST00000439643 279 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 BRK1P2-201ENST00000442875 223 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 RPS27AP8-201ENST00000452665 445 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.55□□□□□ -2
DDX28Q9NUL7 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.55□□□□□ -2
DDX28Q9NUL7 SNORD42A-201ENST00000459584 64 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 RAP1BP2-201ENST00000478270 544 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.55□□□□□ -2
DDX28Q9NUL7 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.55□□□□□ -2
DDX28Q9NUL7 AP003122.3-201ENST00000526316 255 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC084851.1-201ENST00000529105 249 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.55□□□□□ -2
DDX28Q9NUL7 AC027807.1-201ENST00000559921 996 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC012414.6-201ENST00000568241 401 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.55□□□□□ -2
DDX28Q9NUL7 AC005771.1-201ENST00000585581 349 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.55□□□□□ -2
DDX28Q9NUL7 OR1M4P-201ENST00000589199 287 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 Z99497.2-201ENST00000603634 310 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 MTND4P35-201ENST00000604257 1375 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC090115.4-201ENST00000609970 188 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC130324.3-201ENST00000614165 542 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AP001506.1-201ENST00000615444 211 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 ATP5A1P2-202ENST00000616464 443 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 AC008147.4-201ENST00000617570 1204 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 Z99571.1-201ENST00000636677 394 ntBASIC2.55□□□□□ -2
DDX28Q9NUL7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.54□□□□□ -2
DDX28Q9NUL7 ZNF271P-202ENST00000465539 1970 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 U3.4-201ENST00000363352 213 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 SNORA68.1-201ENST00000364537 132 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 SNORA67.1-201ENST00000364749 141 ntBASIC2.54□□□□□ -2
DDX28Q9NUL7 SNORA20.2-201ENST00000383922 131 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms