Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
EXOSC4Q9NPD3 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 UBE2L2-201ENST00000254302 429 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AL391994.1-201ENST00000254724 282 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 Y_RNA.46-201ENST00000362695 102 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-1083P-201ENST00000384022 107 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-701P-201ENST00000384059 107 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC096649.2-201ENST00000416186 393 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 NPM1P11-201ENST00000417106 855 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AL354941.1-201ENST00000438600 464 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC128713.1-201ENST00000471495 306 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC072039.1-201ENST00000477611 581 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AL049873.1-201ENST00000480540 376 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC139453.3-201ENST00000493276 369 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 RPF2P2-201ENST00000504693 896 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC116347.2-201ENST00000514912 523 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 RN7SKP258-201ENST00000517151 304 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 MTATP6P15-201ENST00000527233 835 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC123904.2-201ENST00000548059 300 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 OR11H5P-201ENST00000554039 926 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 ANP32BP3-201ENST00000559213 706 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC090888.2-201ENST00000559765 1144 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC009097.3-201ENST00000563557 1018 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 MIR3935-201ENST00000583472 104 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AL161798.1-201ENST00000604630 131 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC007938.3-201ENST00000604965 623 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC108747.1-201ENST00000609508 535 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AL391262.2-201ENST00000622466 494 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 AC093591.3-201ENST00000634516 308 ntBASIC1.89□□□□□ -2.11
EXOSC4Q9NPD3 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 Y_RNA.18-201ENST00000362461 102 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-1214P-201ENST00000363650 109 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 U8.14-201ENST00000390843 143 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 SNORA48.3-201ENST00000391081 134 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC009963.1-201ENST00000417265 157 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 TIMM9P1-201ENST00000436122 256 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 UBE2FP3-201ENST00000436366 524 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 GDI2P2-201ENST00000445131 608 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 Z73417.1-201ENST00000447373 778 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 RNU1-103P-201ENST00000516502 125 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 RNA5SP281-201ENST00000516504 135 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AP001372.4-201ENST00000524889 472 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC023050.2-201ENST00000544968 387 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL356432.3-201ENST00000568952 465 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC018714.1-201ENST00000605028 208 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC103710.1-201ENST00000610003 901 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 uc_338.20-201ENST00000621563 178 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AL031601.2-202ENST00000622650 282 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 U2.21-201ENST00000637295 81 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 AC110491.1-201ENST00000562191 2010 ntBASIC1.88□□□□□ -2.11
EXOSC4Q9NPD3 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 ELF2P3-201ENST00000445099 1506 ntBASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 Y_RNA.97-201ENST00000363094 102 ntBASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-778P-201ENST00000363269 103 ntBASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 RNU5A-8P-201ENST00000364102 114 ntBASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 RNU1-91P-201ENST00000364746 163 ntBASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 RNU1-73P-201ENST00000383971 164 ntBASIC1.87□□□□□ -2.11
EXOSC4Q9NPD3 RNU6-14P-201ENST00000384630 106 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms