Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 MIR1-2-201ENST00000384961 85 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 RNA5SP252-201ENST00000391131 119 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 AL031577.2-201ENST00000404133 280 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 MTCYBP36-201ENST00000404146 440 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.15□□□□□ -2.07
SCN2AQ99250 AL513477.1-202ENST00000417061 214 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 ELOCP4-201ENST00000420090 333 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 AC098826.1-201ENST00000433943 471 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 USP9YP8-201ENST00000441913 500 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 Z83846.1-201ENST00000446798 265 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.15□□□□□ -2.07
SCN2AQ99250 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.15□□□□□ -2.07
SCN2AQ99250 snoU109.1-201ENST00000459339 135 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 UBL5P3-201ENST00000475112 231 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 RPL36AP51-201ENST00000487216 318 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 AC135721.1-201ENST00000497954 479 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 ARL4AP2-201ENST00000507378 601 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.15□□□□□ -2.07
SCN2AQ99250 RNA5SP471-201ENST00000516971 106 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
SCN2AQ99250 AP003122.4-201ENST00000530980 758 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
SCN2AQ99250 AL359999.1-201ENST00000604513 294 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 AC013476.2-201ENST00000614456 459 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 AC108479.2-201ENST00000617314 601 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
SCN2AQ99250 ZNF271P-202ENST00000465539 1970 ntBASIC2.15□□□□□ -2.07
SCN2AQ99250 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.15□□□□□ -2.07
SCN2AQ99250 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SCN2AQ99250 SMIM11P1-201ENST00000369586 178 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
SCN2AQ99250 RNA5SP492-201ENST00000411330 114 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN2AQ99250 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN2AQ99250 AC098614.2-201ENST00000426040 255 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN2AQ99250 RPL22P17-201ENST00000438729 315 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN2AQ99250 RPS29P12-201ENST00000460178 152 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AC087588.1-201ENST00000462203 316 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AC233702.1-201ENST00000482905 502 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 MTND5P13-201ENST00000513046 1079 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN2AQ99250 RNU7-51P-201ENST00000516560 62 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AP001646.1-201ENST00000527936 915 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AP000873.5-201ENST00000533906 236 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
SCN2AQ99250 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.14□□□□□ -2.07
SCN2AQ99250 AL157871.3-201ENST00000557231 293 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 TRAV28-201ENST00000557548 323 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 PIGPP4-201ENST00000584447 307 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 MTND4LP5-201ENST00000605152 292 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AC131902.3-201ENST00000611767 581 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AC104010.1-201ENST00000616889 150 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 AL136313.1-201ENST00000624804 202 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SCN2AQ99250 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.14□□□□□ -2.07
SCN2AQ99250 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.14□□□□□ -2.07
SCN2AQ99250 AL390237.1-201ENST00000404226 1415 ntBASIC2.14□□□□□ -2.07
SCN2AQ99250 FARSBP1-201ENST00000435808 1778 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.13□□□□□ -2.07
SCN2AQ99250 Y_RNA.159-201ENST00000363674 87 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
SCN2AQ99250 RPL23AP32-201ENST00000395315 459 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AL591416.1-201ENST00000404015 867 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 RNU2-33P-201ENST00000410344 192 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 RNU2-66P-201ENST00000410650 161 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 RNA5SP508-201ENST00000411327 119 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AL139156.1-201ENST00000412785 841 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN2AQ99250 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN2AQ99250 MTND2P4-201ENST00000445034 1004 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.13□□□□□ -2.07
SCN2AQ99250 AC010099.1-201ENST00000455434 375 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN2AQ99250 AL031183.1-201ENST00000457667 207 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC073901.1-201ENST00000462471 408 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 SNORA18.6-201ENST00000516792 115 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 MTND2P38-201ENST00000522536 667 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC123904.3-201ENST00000547218 814 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN2AQ99250 AC009063.1-201ENST00000563342 702 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 ROCK1P1-201ENST00000573767 549 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.13□□□□□ -2.07
SCN2AQ99250 AC174048.1-201ENST00000603389 144 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC073648.5-201ENST00000603502 305 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC005332.10-201ENST00000612725 619 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AL161629.2-201ENST00000615347 275 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 uc_338.12-201ENST00000616344 181 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC091564.4-201ENST00000533934 2194 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 VTRNA1-1-201ENST00000363120 99 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 RNU1-105P-201ENST00000363470 161 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 Y_RNA.245-201ENST00000364493 95 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 RNU6-946P-201ENST00000383878 107 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 RNU6-1027P-201ENST00000383998 107 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 HMGB1P11-201ENST00000413899 637 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN2AQ99250 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.13□□□□□ -2.07
SCN2AQ99250 ZNF114P1-201ENST00000453500 292 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 MTND1P3-201ENST00000484956 952 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms